Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq1 150 1e-31
seq5 120 2e-22
seq4 100 2e-16
seq6 95.1 8e-15
>seq1
Length=33132539
Score = 150 bits (166), Expect = 1e-31
Identities = 173/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| ||||||| ||| | ||||||||| || || |||||| || ||||||||||| |
Sbjct 10397126 CACCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAG 10397067
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
|||||| | | | || ||||||||||||||||| || || || || |||||||| | |
Sbjct 10397066 CGAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTG 10397007
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||||||||| ||| ||| |||| |||| ||| | ||||| ||||||
Sbjct 10397006 GGATTCCTTCTTTGTCTTGAATCTTCGCTTTC-ACATTGTCGATTGTGTCTGATGATTCA 10396948
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | || || || || || |||| ||||| || |||||||||||
Sbjct 10396947 ACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 10396898
Score = 84.2 bits (92), Expect = 1e-11
Identities = 145/207 (70%), Gaps = 8/207 (4%)
Strand=Plus/Minus
Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606
|| ||||| |||||| || ||||||||||| | | ||||| | || || | |||
Sbjct 29081732 TGAAGAGTTGACTCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCAAGTTGC 29081673
Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666
|| |||||||| || | | |||||| || | || | ||||||||||| || ||
Sbjct 29081672 TTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTT- 29081614
Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722
|| | |||| ||| | ||| || ||| |||||| |||| |||||| || || ||
Sbjct 29081613 TGCCTTCACATTGTCAATGGTATCAGAGCT---TTCCACTTCAAGCGTGATGGTCTTTCC 29081557
Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || || || ||||| ||||||||
Sbjct 29081556 CGTCAAAGTCTTGACAAATATCTGCAT 29081530
>seq5
Length=21221946
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
||||||| | | ||| | |||| ||| || || ||| || || |||||||| ||||
Sbjct 20743201 CACCACCACGGAGACGGAGGACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 20743142
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
||| || || |||| |||| ||||| ||||| |||||||| |||||||| || | |
Sbjct 20743141 CGAGGGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTG 20743082
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| || ||| ||||| ||| ||| | ||||||| |||||
Sbjct 20743081 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTCA-CATTGTCGATGGTGTCGGACGATTCA 20743023
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | || || || || || |||| ||||| || |||||||||||
Sbjct 20743022 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 20742973
>seq4
Length=23328337
Score = 100 bits (110), Expect = 2e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618
|| || || ||||||||||||| | || ||| |||| || | || |||||||| |||
Sbjct 22908920 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 22908861
Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678
||||| ||||||||||| | || | |||||| ||||| || || | | ||||
Sbjct 22908860 ATCAATCGCTGCTGATCCGGTGGGATACCTTCCTTGTCTTGGATCTT-GGCCTTGACATT 22908802
Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737
||| | |||||| || || || || | |||||||| || || |||| ||||| ||
Sbjct 22908801 GTCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCAC 22908742
Query 33738 AAAGATCTGCAT 33749
|||||||||||
Sbjct 22908741 GAAGATCTGCAT 22908730
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/233 (69%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||| | ||| | ||||||||| ||||| |||||| || |||||||| || |
Sbjct 15771340 ACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGC 15771399
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | | |||| || | || || |||||||| || | | ||| || || | ||
Sbjct 15771400 AAGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGG 15771459
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGAT---T 33697
| ||||| ||||| || || ||| | ||| ||| |||||| ||| |
Sbjct 15771460 AATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CATTATCAATGGTGTC---TGAACTCT 15771515
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || | || || |||||||| || | || || |||||||||||||||
Sbjct 15771516 CAACCTCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATA 15771568
>seq6
Length=25113588
Score = 95.1 bits (104), Expect = 8e-15
Identities = 163/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||| | ||| | ||||||||| || || |||||| || || ||||| || |
Sbjct 10622317 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAGTCAGC 10622258
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|||||| || | || || | ||||| || || || || | | |||||| ||| | ||
Sbjct 10622257 GAGTGTACGACCATCTTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGTGG 10622198
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGAT---T 33697
| || ||||| || || || ||| ||||| |||| ||||| ||| |
Sbjct 10622197 GATTCCCTCTTTATCCTGGATCTTAGCTTT-AACATTGTCAATAGTGTC---TGAACTCT 10622142
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || | ||||| |||||||| || || || || |||||||||||||||
Sbjct 10622141 CAACCTCGAGAGTGATTGTTTTACCAGTCAATGTCTTCACAAAGATCTGCATA 10622089
Score = 95.1 bits (104), Expect = 8e-15
Identities = 163/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| || | || ||||||||||||||| || || ||| || || |||||||| || |
Sbjct 22900892 ACCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 22900833
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || | |||| || | ||| |||||||| || ||||| | |||||| || | ||
Sbjct 22900832 CAAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 22900773
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| ||| |||||||| || || | || |||| ||| | |||||| ||| |
Sbjct 22900772 AATACCCTCTTTGTCCTGGATCTT-GGCTTTGACATTGTCGATGGTGTCAGAGCT---CT 22900717
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
|||| || | ||||| || || || || ||||| || || ||||| ||||||
Sbjct 22900716 CCACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCATA 22900664
Score = 89.7 bits (98), Expect = 3e-13
Identities = 153/218 (70%), Gaps = 8/218 (4%)
Strand=Plus/Minus
Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596
|| |||||| || || || ||| || || |||||||| || | | ||||| | ||
Sbjct 23404631 TAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGGCCATC 23404572
Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656
|| | |||||||| || || || | ||||||||| ||| | || | ||||| |||||
Sbjct 23404571 CTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTC 23404512
Query 33657 GGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGAT---TCCACGTCAACCGTGA 33712
|| || |||| ||| |||| |||||| ||| ||||| |||| ||||
Sbjct 23404511 CTGGATCTTGGCCTTCA-CATTGTCAATGGTGTC---TGAGCTCTCCACTTCAAGGGTGA 23404456
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || ||||| || || || || |||||||||||||||
Sbjct 23404455 TGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCATA 23404418
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| || ||||| |||||| || |||||||||||||
Sbjct 22886757 ACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGC 22886698
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| | || || | || ||||| || || || | ||||||||| || ||
Sbjct 22886697 CAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGG 22886638
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| || || ||| || | ||| | ||||||| ||||
Sbjct 22886637 GATACCTTCCTTGTCCTGGATCTTAGCCTTC-ACGTTGTCAATGGTGTCGGAGCTCTCCA 22886579
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| ||||| || || || || || || || || ||||||||||||
Sbjct 22886578 CTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATA 22886529
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | | ||| | ||||| || ||||| |||||| || |||||||||||||
Sbjct 23069766 ACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGC 23069707
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| ||||| | || || | || ||||| || || || | ||||||||| || ||
Sbjct 23069706 CAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGG 23069647
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| |||||| ||||| || || ||| || | ||| | ||||||| ||||
Sbjct 23069646 GATACCTTCCTTGTCCTGGATCTTAGCCTTC-ACGTTGTCAATGGTGTCGGAGCTCTCCA 23069588
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| |||| ||||| || || || || || || || || ||||||||||||
Sbjct 23069587 CTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATA 23069538
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/233 (69%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||| | ||| | ||||||||| ||||| |||||| || |||||||| || |
Sbjct 905419 ACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGC 905478
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| || | | |||| || | || || |||||||| || | | ||| || || | ||
Sbjct 905479 AAGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGG 905538
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGAT---T 33697
| ||||| ||||| || || ||| | ||| ||| |||||| ||| |
Sbjct 905539 AATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CATTATCAATGGTGTC---TGAACTCT 905594
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || | || || |||||||| || | || || |||||||||||||||
Sbjct 905595 CAACCTCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATA 905647
Score = 86.0 bits (94), Expect = 4e-12
Identities = 149/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || || ||| || || || ||||||||||| | | || || | || |||
Sbjct 22886227 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAACGTACGGCCATCCTCC 22886168
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
|| || |||||||| ||||| | | ||||||||| | || | ||||| |||||
Sbjct 22886167 AACTGCTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 22886108
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716
|| || | || ||| | ||| | |||||| ||| |||||| |||| ||||| ||
Sbjct 22886107 ATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATAGT 22886052
Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || || | ||||| || |||||||||||
Sbjct 22886051 CTTTCCGGTGAGAGTTTTAACGAAGATCTGCAT 22886019
Score = 86.0 bits (94), Expect = 4e-12
Identities = 149/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600
||||| || || ||| || || || ||||||||||| | | || || | || |||
Sbjct 23069236 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAACGTACGGCCATCCTCC 23069177
Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660
|| || |||||||| ||||| | | ||||||||| | || | ||||| |||||
Sbjct 23069176 AACTGCTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 23069117
Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716
|| || | || ||| | ||| | |||||| ||| |||||| |||| ||||| ||
Sbjct 23069116 ATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATAGT 23069061
Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || || | ||||| || |||||||||||
Sbjct 23069060 CTTTCCGGTGAGAGTTTTAACGAAGATCTGCAT 23069028
Score = 84.2 bits (92), Expect = 1e-11
Identities = 160/232 (69%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||||||||| ||||| | ||||| || ||||| ||||| || |||||||||||||
Sbjct 10622089 ACCACCTCTTAAACGAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGC 10622030
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
| || || | || || | ||||| ||||| || || || | ||||| ||| | ||
Sbjct 10622029 CAAAGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCTAGAGG 10621970
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697
| ||||| ||||| ||| || || | ||||| ||| | |||||| ||| |
Sbjct 10621969 AATCCCTTCCTTGTCCTGAATCTT-TGCCTTAACATTGTCAATGGTGTCAGAGCT---CT 10621914
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || || | || || || || || || | ||||| ||||| || |||||
Sbjct 10621913 CAACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACAAAAATTTGCAT 10621862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328701211768320
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