Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 150 1e-31 seq5 120 2e-22 seq4 100 2e-16 seq6 95.1 8e-15 >seq1 Length=33132539 Score = 150 bits (166), Expect = 1e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||| ||| | ||||||||| || || |||||| || ||||||||||| | Sbjct 10397126 CACCTCCTCTCAGACGAAGCACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAATCAG 10397067 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| | | | || ||||||||||||||||| || || || || |||||||| | | Sbjct 10397066 CGAGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATTAACCGTTGCTGATCCGGTG 10397007 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||||||||| ||| ||| |||| |||| ||| | ||||| |||||| Sbjct 10397006 GGATTCCTTCTTTGTCTTGAATCTTCGCTTTC-ACATTGTCGATTGTGTCTGATGATTCA 10396948 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 10396947 ACCTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 10396898 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| |||||| || ||||||||||| | | ||||| | || || | ||| Sbjct 29081732 TGAAGAGTTGACTCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCAAGTTGC 29081673 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| || | | |||||| || | || | ||||||||||| || || Sbjct 29081672 TTCCCGGCAAAGATTAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTGTCCTGGATCTT- 29081614 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 || | |||| ||| | ||| || ||| |||||| |||| |||||| || || || Sbjct 29081613 TGCCTTCACATTGTCAATGGTATCAGAGCT---TTCCACTTCAAGCGTGATGGTCTTTCC 29081557 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || ||||| |||||||| Sbjct 29081556 CGTCAAAGTCTTGACAAATATCTGCAT 29081530 >seq5 Length=21221946 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | |||| ||| || || ||| || || |||||||| |||| Sbjct 20743201 CACCACCACGGAGACGGAGGACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGG 20743142 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| || || |||| |||| ||||| ||||| |||||||| |||||||| || | | Sbjct 20743141 CGAGGGTACGGCCGTCTTCCAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTG 20743082 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||||| ||| ||| | ||||||| ||||| Sbjct 20743081 GGATTCCTTCCTTGTCTTGGATCTTCGCTTTCA-CATTGTCGATGGTGTCGGACGATTCA 20743023 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 20743022 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 20742973 >seq4 Length=23328337 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||| | || ||| |||| || | || |||||||| ||| Sbjct 22908920 TCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAA 22908861 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| ||||||||||| | || | |||||| ||||| || || | | |||| Sbjct 22908860 ATCAATCGCTGCTGATCCGGTGGGATACCTTCCTTGTCTTGGATCTT-GGCCTTGACATT 22908802 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| || || || || | |||||||| || || |||| ||||| || Sbjct 22908801 GTCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCAC 22908742 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 22908741 GAAGATCTGCAT 22908730 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||||||| ||||| |||||| || |||||||| || | Sbjct 15771340 ACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGC 15771399 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | |||| || | || || |||||||| || | | ||| || || | || Sbjct 15771400 AAGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGG 15771459 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGAT---T 33697 | ||||| ||||| || || ||| | ||| ||| |||||| ||| | Sbjct 15771460 AATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CATTATCAATGGTGTC---TGAACTCT 15771515 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || |||||||| || | || || ||||||||||||||| Sbjct 15771516 CAACCTCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATA 15771568 >seq6 Length=25113588 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||||||| || || |||||| || || ||||| || | Sbjct 10622317 ACCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAGTCAGC 10622258 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||| || | || || | ||||| || || || || | | |||||| ||| | || Sbjct 10622257 GAGTGTACGACCATCTTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGTGG 10622198 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGAT---T 33697 | || ||||| || || || ||| ||||| |||| ||||| ||| | Sbjct 10622197 GATTCCCTCTTTATCCTGGATCTTAGCTTT-AACATTGTCAATAGTGTC---TGAACTCT 10622142 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| |||||||| || || || || ||||||||||||||| Sbjct 10622141 CAACCTCGAGAGTGATTGTTTTACCAGTCAATGTCTTCACAAAGATCTGCATA 10622089 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||||||||||||||| || || ||| || || |||||||| || | Sbjct 22900892 ACCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 22900833 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | |||| || | ||| |||||||| || ||||| | |||||| || | || Sbjct 22900832 CAAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGG 22900773 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| |||||||| || || | || |||| ||| | |||||| ||| | Sbjct 22900772 AATACCCTCTTTGTCCTGGATCTT-GGCTTTGACATTGTCGATGGTGTCAGAGCT---CT 22900717 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | ||||| || || || || ||||| || || ||||| |||||| Sbjct 22900716 CCACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCATA 22900664 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 || |||||| || || || ||| || || |||||||| || | | ||||| | || Sbjct 23404631 TAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGGCCATC 23404572 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || | |||||||| || || || | ||||||||| ||| | || | ||||| ||||| Sbjct 23404571 CTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTC 23404512 Query 33657 GGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGAT---TCCACGTCAACCGTGA 33712 || || |||| ||| |||| |||||| ||| ||||| |||| |||| Sbjct 23404511 CTGGATCTTGGCCTTCA-CATTGTCAATGGTGTC---TGAGCTCTCCACTTCAAGGGTGA 23404456 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || ||||| || || || || ||||||||||||||| Sbjct 23404455 TGGTCTTACCGGTCAAAGTCTTGACAAAGATCTGCATA 23404418 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || ||||| |||||| || ||||||||||||| Sbjct 22886757 ACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGC 22886698 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | || ||||| || || || | ||||||||| || || Sbjct 22886697 CAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGG 22886638 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || ||| || | ||| | ||||||| |||| Sbjct 22886637 GATACCTTCCTTGTCCTGGATCTTAGCCTTC-ACGTTGTCAATGGTGTCGGAGCTCTCCA 22886579 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || || || |||||||||||| Sbjct 22886578 CTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATA 22886529 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || ||||| |||||| || ||||||||||||| Sbjct 23069766 ACCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGC 23069707 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | || ||||| || || || | ||||||||| || || Sbjct 23069706 CAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCAAAGG 23069647 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| || || ||| || | ||| | ||||||| |||| Sbjct 23069646 GATACCTTCCTTGTCCTGGATCTTAGCCTTC-ACGTTGTCAATGGTGTCGGAGCTCTCCA 23069588 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || || || || || |||||||||||| Sbjct 23069587 CTTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATA 23069538 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||||||| ||||| |||||| || |||||||| || | Sbjct 905419 ACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGC 905478 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | |||| || | || || |||||||| || | | ||| || || | || Sbjct 905479 AAGAGTTCTTCCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGG 905538 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGAT---T 33697 | ||||| ||||| || || ||| | ||| ||| |||||| ||| | Sbjct 905539 AATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CATTATCAATGGTGTC---TGAACTCT 905594 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || |||||||| || | || || ||||||||||||||| Sbjct 905595 CAACCTCGAGGGTAATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATA 905647 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| || || || ||||||||||| | | || || | || ||| Sbjct 22886227 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAACGTACGGCCATCCTCC 22886168 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || || |||||||| ||||| | | ||||||||| | || | ||||| ||||| Sbjct 22886167 AACTGCTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 22886108 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 || || | || ||| | ||| | |||||| ||| |||||| |||| ||||| || Sbjct 22886107 ATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATAGT 22886052 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | ||||| || ||||||||||| Sbjct 22886051 CTTTCCGGTGAGAGTTTTAACGAAGATCTGCAT 22886019 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| || || || ||||||||||| | | || || | || ||| Sbjct 23069236 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAACGTACGGCCATCCTCC 23069177 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || || |||||||| ||||| | | ||||||||| | || | ||||| ||||| Sbjct 23069176 AACTGCTTTCCGGCGAAAATAAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 23069117 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 || || | || ||| | ||| | |||||| ||| |||||| |||| ||||| || Sbjct 23069116 ATCTT-GGCTTTAACGTTGTCGATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATAGT 23069061 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || | ||||| || ||||||||||| Sbjct 23069060 CTTTCCGGTGAGAGTTTTAACGAAGATCTGCAT 23069028 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | ||||| || ||||| ||||| || ||||||||||||| Sbjct 10622089 ACCACCTCTTAAACGAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGC 10622030 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||||| ||||| || || || | ||||| ||| | || Sbjct 10622029 CAAAGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCTAGAGG 10621970 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || || | ||||| ||| | |||||| ||| | Sbjct 10621969 AATCCCTTCCTTGTCCTGAATCTT-TGCCTTAACATTGTCAATGGTGTCAGAGCT---CT 10621914 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || || || || | ||||| ||||| || ||||| Sbjct 10621913 CAACCTCGAGAGTAATGGTCTTGCCAGTGAGTGTTTTCACAAAAATTTGCAT 10621862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701211768320