Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_025456.1
Length=46547
Score E
Sequences producing significant alignments: (Bits) Value
seq696 589 6e-164
seq74 217 4e-52
seq2 91.5 4e-14
>seq696
Length=154923
Score = 589 bits (652), Expect = 6e-164
Identities = 713/961 (74%), Gaps = 10/961 (1%)
Strand=Plus/Minus
Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591
||||||||||| |||| |||||||| ||||||| || | || ||| || |
Sbjct 1343 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1285
Query 19592 ATCTGCTTC-ATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650
|| | || ||||| ||||||||||| ||||| ||||| || |||||||| || || ||
Sbjct 1284 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1225
Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710
||| || || || |||||||| |||||||| || || || || ||| | |||| |
Sbjct 1224 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 1165
Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768
| ||| || || || | || || ||||| || ||||||||| || ||||||||
Sbjct 1164 TTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 1107
Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828
||||| |||||||| || || | |||| | || | ||||| | |||| | |
Sbjct 1106 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1047
Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGT 19888
||| ||||| || |||||||||||||| | || || || ||| | |||||||||
Sbjct 1046 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCG 987
Query 19889 GTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGG 19947
||||| || || ||||| |||||||| || |||| || ||||| | |||| || ||||
Sbjct 986 GTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGT-TTTCTTGATCTATCCAATTGG 928
Query 19948 TCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTT 20007
|||||| || || || |||| ||||||| | || ||||| ||||| ||||||| ||| |
Sbjct 927 TCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 868
Query 20008 GGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGG 20067
|||||||| || || || |||||||| |||||||| || |||||| | ||||| |||||
Sbjct 867 TGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGG 808
Query 20068 TGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGT 20127
||||||||| || || || || ||||| ||||| ||||| |||| || | || | |||
Sbjct 807 TGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGTTTGA 749
Query 20128 GC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAG 20186
| | || || || ||| | ||| | || | ||||||| || |||||||||||||
Sbjct 748 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAG 689
Query 20187 AGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTT 20246
| || || ||||| ||||| ||||| ||||| ||||| || |||||||||||||| |||
Sbjct 688 AAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 629
Query 20247 CTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTT 20306
|||||||||| |||||| |||| |||||| | || || |||||||| ||||| ||||
Sbjct 628 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTT 569
Query 20307 GGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACC 20366
|||| |||| || || || ||| ||||| || || || || |||||||| || ||||
Sbjct 568 GGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 509
Query 20367 AGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTG 20426
| || | | || | | || ||||| ||| ||||||||||||| ||| | || ||||
Sbjct 508 AATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTG 449
Query 20427 CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTG 20486
|||| || || | || || ||||||||||| |||||||| |||||||| || ||||| |
Sbjct 448 CTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAG 389
Query 20487 C 20487
|
Sbjct 388 C 388
>seq74
Length=21493
Score = 217 bits (240), Expect = 4e-52
Identities = 243/326 (75%), Gaps = 9/326 (3%)
Strand=Plus/Minus
Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221
||||||| || || ||||||||| | || || ||||| ||||| ||||||||||| |||
Sbjct 11003 GGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 10944
Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281
|| || |||||||||| |||||||||| |||||| |||| |||||| |
Sbjct 10943 GGCCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 10893
Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341
|| || |||||||| ||||| |||||||| |||| || || || || ||||| ||
Sbjct 10892 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTC 10833
Query 20342 AATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGAT 20401
|| || || |||||||| || ||||| || | | || | | || ||||| ||| ||
Sbjct 10832 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAAT 10773
Query 20402 ACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAAT 20461
||||||||||| ||| | || ||| |||| | || | || || ||||||||||| |||
Sbjct 10772 ACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 10713
Query 20462 GCTCATAACTTCCCACTTGACCTTGC 20487
||||| |||||||| || ||||| ||
Sbjct 10712 GCTCACAACTTCCCTCTAGACCTAGC 10687
>seq2
Length=19320864
Score = 91.5 bits (100), Expect = 4e-14
Identities = 128/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591
||||||||||| |||| |||||||| ||||||| || | || ||| || |
Sbjct 8835056 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 8835114
Query 19592 ATCTGCTTCA-TTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650
|| | || |||| ||||||||||| ||||| ||||| || |||||||| || || ||
Sbjct 8835115 TTCCGTTTTTGTTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 8835174
Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCC 19707
||| || || || |||||||| |||||||| || || || || ||| | ||||
Sbjct 8835175 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCC 8835231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148827569929968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |