Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq696 551 2e-152 seq74 215 2e-51 seq2 95.1 4e-15 >seq696 Length=154923 Score = 551 bits (610), Expect = 2e-152 Identities = 703/961 (73%), Gaps = 8/961 (1%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 1343 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 1285 Query 28720 ATCTGCTTC-ATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | || ||||| ||||||||||| || || ||||| || |||||||| || || || Sbjct 1284 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 1225 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 |||||| ||||| |||||| || |||||||| || || || || ||| | | || | Sbjct 1224 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTAC 1165 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | || || ||||| || ||||||||| || |||||||| Sbjct 1164 TTCTGCA--GCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 1107 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||||| |||||||| || || | |||| | || | ||||| | |||| || | Sbjct 1106 TGGCTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 1047 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGT 29016 ||| ||||| || |||||||||||||| | || || || ||| | || |||||| Sbjct 1046 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCG 987 Query 29017 GTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGT 29076 || ||||| |||||||| || ||||| || |||| |||||| | |||| ||| | ||| Sbjct 986 GTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGT 927 Query 29077 CAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTG 29136 || || |||| || | |||||| | || || || || || ||||||| ||| | Sbjct 926 CAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 867 Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || ||||| || || || |||||||| |||||||| || |||||| | || || ||||| Sbjct 866 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 807 Query 29197 GTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTG 29256 || ||||| ||||| || |||||||| ||||| ||||| | || || || | | ||| Sbjct 806 GTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTC-TAGTTTGAT 748 Query 29257 C-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGA 29315 | | || || || ||| | ||| || | ||||||| || || ||||||||||| Sbjct 747 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGA 688 Query 29316 GACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTC 29375 ||||| ||||| ||||| ||||||||||| ||||| || |||||||||||||||||| Sbjct 687 AACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 628 Query 29376 TTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 29435 |||||| ||| |||||| |||| |||||| | || || |||||||| ||||| ||||| Sbjct 627 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTG 568 Query 29436 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCA 29495 ||| |||| || || || ||| ||||| || || || || ||||| || || ||||| Sbjct 567 GTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 508 Query 29496 GTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGC 29555 || | | || | | || ||||| |||||||||||||||||| || | || || || Sbjct 507 ATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGC 448 Query 29556 TAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||| || | ||||| |||||||| ||||||||||| |||||||| || || || || Sbjct 447 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 388 Query 29616 T 29616 | Sbjct 387 T 387 >seq74 Length=21493 Score = 215 bits (238), Expect = 2e-51 Identities = 243/327 (74%), Gaps = 9/327 (3%) Strand=Plus/Minus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| || || ||||||||| | ||||| ||||| ||||| ||||| ||||| ||| Sbjct 11003 GGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 10944 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || || |||||||||| |||||| ||| |||||| |||| |||||| | Sbjct 10943 GGCCGATTGATCTTCCG---------TTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 10893 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 || || |||||||| ||||| |||||||| |||| || || || || ||||| || Sbjct 10892 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTC 10833 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || || || ||||| || || ||||| || | | || | | || ||||| |||||| Sbjct 10832 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAAT 10773 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 |||||||||||| || | || || ||||| | || | ||||| |||||||| |||||| Sbjct 10772 ACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 10713 Query 29590 GCTCATAACTTCCCACTTGATCTGGCT 29616 ||||| |||||||| || || || ||| Sbjct 10712 GCTCACAACTTCCCTCTAGACCTAGCT 10686 >seq2 Length=19320864 Score = 95.1 bits (104), Expect = 4e-15 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||||||||| |||| |||||||| ||||||| || | || ||| || | Sbjct 8835056 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 8835114 Query 28720 ATCTGCTTCA-TTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 || | || |||| ||||||||||| || || ||||| || |||||||| || || || Sbjct 8835115 TTCCGTTTTTGTTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 8835174 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCC 28827 |||||| ||||| |||||| || |||||||| || || || || ||| Sbjct 8835175 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCC 8835223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146664387808816