Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_025464.1
Length=44147
Score E
Sequences producing significant alignments: (Bits) Value
seq696 609 7e-170
seq74 215 1e-51
seq2 122 2e-23
>seq696
Length=154923
Score = 609 bits (674), Expect = 7e-170
Identities = 728/981 (74%), Gaps = 8/981 (1%)
Strand=Plus/Minus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| ||||| ||||||| || || ||||||||||| || || |||||||| ||
Sbjct 1370 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1311
Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842
||||| || | || ||| | || ||| ||| ||||| || ||||||||||| ||
Sbjct 1310 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 1252
Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902
||| ||||| |||||||| || || || |||||| | || ||||||||| ||||||||
Sbjct 1251 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1192
Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960
|| || || || ||| | |||| | | ||| || || || | || || |||||
Sbjct 1191 TATTATTTCCGGTGCCATTATTCCTACTTCTGCA--GCTATTGGTTTGCATTTTTACCCG 1134
Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020
|| ||||||||| || ||||||||||||| |||||||| || || | |||| |
Sbjct 1133 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGTGGTCCTTATGAACTAATT 1074
Query 19021 GTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080
|| | ||||| | |||| || | ||| ||||| || |||||||||||||| |
Sbjct 1073 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 1014
Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140
|| || || ||||| ||||||||| ||||| || |||||||||||||| || || ||
Sbjct 1013 CGTCTGGGTATGCGTCCTTGGATTGCGGTTGCATATTCAGCTCCTGTTGCAGCTGCGACT 954
Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200
|| || ||| | |||||||| ||||||| || ||| || | ||||||| | ||
Sbjct 953 GCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGA 894
Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260
|| |||||| ||||||| ||| |||||||||||||||| || ||||| || ||||||
Sbjct 893 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 834
Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320
|| || |||||| | ||||| |||||||| |||||||| || || |||||||| |||||
Sbjct 833 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCAT 774
Query 19321 GGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTA 19379
||||| |||| || | || | ||| | | ||||| || ||| | | |||| || |
Sbjct 773 GGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 715
Query 19380 TGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTT 19439
|| |||| || |||||||||||||| ||||| |||||||| |||||||| || |||||
Sbjct 714 AGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTT 655
Query 19440 TGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTT 19499
||| || | || ||||| || || ||||||||| |||||| |||||||||| ||
Sbjct 654 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 595
Query 19500 GGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATT 19559
|| |||||||| || || || ||||||||| | || | || | || || ||||| ||
Sbjct 594 AGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTT 535
Query 19560 CAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGA 19619
|||| | ||||| || || || ||||| || | |||| | | || ||||| ||| |
Sbjct 534 CAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAA 475
Query 19620 TACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAA 19679
|||||||||||| ||| | || ||||||||||| || | || || ||||| ||||||||
Sbjct 474 TACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 415
Query 19680 TGCTCATAACTTCCCACTTGA 19700
|||||| |||||||| || ||
Sbjct 414 TGCTCACAACTTCCCTCTAGA 394
>seq74
Length=21493
Score = 215 bits (238), Expect = 1e-51
Identities = 240/320 (75%), Gaps = 9/320 (3%)
Strand=Plus/Minus
Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440
|| |||| || || ||||||||| | ||||| |||||||| ||||||||||| ||||||
Sbjct 11003 GGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 10944
Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500
|| || | || |||| || ||||||||| |||||| |||||||||| ||
Sbjct 10943 GGCCGATTGATCTTCC-GT--------TTCAACAATTCTCGTTCTTTACATTTCTTCTTA 10893
Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560
|| |||||||| || || || ||||||||| | || | || | ||||| ||||| |||
Sbjct 10892 GCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCTTTC 10833
Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620
||| | ||||| || || || ||||| || | |||| | | || ||||| ||| ||
Sbjct 10832 AACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGGCGTGTTATTAAT 10773
Query 19621 ACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAAT 19680
||||||||||| ||| | || ||| ||||| | || | || || ||||| |||||||||
Sbjct 10772 ACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 10713
Query 19681 GCTCATAACTTCCCACTTGA 19700
||||| |||||||| || ||
Sbjct 10712 GCTCACAACTTCCCTCTAGA 10693
>seq2
Length=19320864
Score = 122 bits (134), Expect = 2e-23
Identities = 151/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783
|| ||| ||||| ||||||| || || ||||||||||| || || |||||||| ||
Sbjct 8835029 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 8835088
Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACC 18842
||||| || | || ||| | || ||| ||| |||| || ||||||||||| ||
Sbjct 8835089 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTGTTATCGCATTCATTGCTGCTCC 8835147
Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902
||| ||||| |||||||| || || || |||||| | || ||||||||| ||||||||
Sbjct 8835148 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 8835207
Query 18903 CATCATATCGGGAGCCGTCGTTCC 18926
|| || || || ||| | ||||
Sbjct 8835208 TATTATTTCCGGTGCCATTATTCC 8835231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 141147633405168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |