Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 seq6 91.5 1e-13 seq4 87.8 2e-12 seq1 84.2 2e-11 >seq2 Length=19320864 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||| | | | ||||||||||| |||||||| || ||| | ||||| ||| || Sbjct 9126492 ACCAAATGGAGGGTAGACTCTTTTTGGATGTTGTAATCAGCT-AAAGTACGACCATCCTC 9126550 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| ||||||| | |||| || | ||||||||| ||||| || ||||| || || Sbjct 9126551 AAGCTGCTTACCGGCAAAGATGAGTCTCTGTTGATCCGGAGGGATACCTTCCTTGTCTTG 9126610 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| || | | || | ||| || | ||| || || | || | || || Sbjct 9126611 AATCTTTGCCTTGACATTATCAATAGTGTCTGAGCTCTCAACCTCCAAAGTAATGGTCTT 9126670 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | ||||||||||| Sbjct 9126671 TCCAGTGAGGGTCTTCACAAAAATCTGCAT 9126700 >seq6 Length=25113588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | | |||| ||||| || || ||||| ||| ||| |||||| Sbjct 905885 AAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGTCAAGGTACGA 905944 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| |||||| | ||| || || ||||| |||||||| Sbjct 905945 CCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCC 906004 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || ||| ||| || | | || | || || | ||| || |||| || Sbjct 906005 TTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTG 906064 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | || || ||||| Sbjct 906065 ATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 906102 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || ||||| ||| || Sbjct 23404855 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCA 23404796 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | |||| |||||||| || || ||||| || ||||| ||||| Sbjct 23404795 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCTGG 23404736 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || || | |||||| || | ||| | || || Sbjct 23404735 ATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAGCGTGATAGTCTTC 23404676 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||||||| || | ||||||||||||| Sbjct 23404675 CCGGTCAGAGTCTTCACGAAAATCTGCATG 23404646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||||||||||| ||||||||||| || || || ||| || Sbjct 8749026 ACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCCAGTGTGCGACCATCCTCT 8749085 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | |||| || | ||| || || || || || || |||||||| | Sbjct 8749086 AGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCCTGA 8749145 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | || || | ||| || || | || | |||||| Sbjct 8749146 ATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCTAGGGTGATTGTTTTA 8749205 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | || || ||||| Sbjct 8749206 CCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || |||||| ||| || |||||||| || | Sbjct 22901314 GACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGCCCATCCTCAAGCTGTTTTCCAGCG 22901255 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| |||||||| || || || || |||| Sbjct 22901254 AAGATGAGACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 22901195 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||| ||||| | || | ||| || ||||||| ||| || Sbjct 22901194 TTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATCGTCTTGCCAGTCAAAGTCTTG 22901135 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 22901134 ACGAAGATCTGCAT 22901121 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 ||||| || | | | ||||| || || ||||||||||| ||| | ||| || ||| || Sbjct 23404627 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCT-AAGGTGCGGCCATCCTC 23404569 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| || | |||| |||||||| || |||||||| |||||||| || || Sbjct 23404568 AAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTG 23404509 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || |||| | || | || || | ||||||||| | || | || || Sbjct 23404508 GATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACTTCAAGGGTGATGGTCTT 23404449 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| |||| ||| || | || |||||||| Sbjct 23404448 ACCGGTCAAAGTCTTGACAAAGATCTGCAT 23404419 >seq4 Length=23328337 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | | |||| ||||| || || ||||| ||| || |||||| Sbjct 15771806 AAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGA 15771865 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| |||||| | ||| || || ||||| |||||||| Sbjct 15771866 CCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCC 15771925 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || ||| ||| || | | || | || || | ||| || |||| || Sbjct 15771926 TTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTG 15771985 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | || || ||||| Sbjct 15771986 ATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 15772023 >seq1 Length=33132539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| |||||||| |||||||| || | || || ||| |||||||||||||| | Sbjct 29080809 TTGATTCTTTTTGGATGTTGTAATCTGCAAGCGTTCGACCATCCTCGAGCTGTTTACCAG 29080750 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 ||||||| | ||||||||| ||||| || ||||| || || || || ||| | Sbjct 29080749 CGAAGATTAGTCTCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTAA 29080690 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | ||| ||||| | || | |||||||| || || || | Sbjct 29080689 CGTTGTCAATGGTGTCTGAACTCTCGACTTCTAGGGTAATGGTTTTACCGGTGAGCGTCT 29080630 Query 132108 TTATGAAAATCTGCAT 132123 | ||||| |||||||| Sbjct 29080629 TGATGAATATCTGCAT 29080614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607053482560