Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 5e-13 >seq6 Length=25113588 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| || || | ||||||||| | || || | || || || || | Sbjct 10622546 ATGCAAATCTTTGTGAAGACCCTTACCGGAAAAACCATTACTTTGGAGGTTGAGAGTTCA 10622605 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || || |||||| || ||||| || || || || ||||| Sbjct 10622606 -GACACAATCGATAATGTCAAGGCCAAAATTCAGGACAAAGAAGGGATCCCACCAGATCA 10622664 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| |||||||| | || || ||||| || || |||| | | | | | |||||||| Sbjct 10622665 GCAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTCTTGCGGATTACAA 10622724 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||| || ||||| ||| |||| | ||||| Sbjct 10622725 TATTCAGAAGGAATCAACCCTTCACCTTGTGTT 10622757 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | || || || | ||||| |||| || || | Sbjct 906102 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 906043 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||| ||| || || || || || || || || ||| Sbjct 906042 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 905983 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || ||| ||||| || ||||||| | | | | | |||||||||| Sbjct 905982 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGACCGATTACAAT 905923 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||| ||| | || || || | | || ||||| || Sbjct 905922 ATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTTAAGAGGTGG 905876 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| || ||||| || || ||| | ||||| |||| || || || | Sbjct 10622090 ATGCAGATCTTTGTGAAGACATTGACTGGTAAAACAATCACTCTCGAGGTTGAGAGTTCA 10622149 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||| || | || ||| || || ||||||||||| || || || || || Sbjct 10622150 -GACACTATTGACAATGTTAAAGCTAAGATCCAGGATAAAGAGGGAATCCCACCAGACCA 10622208 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| || | || || ||||| || ||||||| | | | || || ||||| Sbjct 10622209 GCAGAGACTTATCTTCGCTGGGAAACAGCTTGAAGATGGTCGTACACTCGCTGACTACAA 10622268 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||| || ||||| || ||| | ||||| ||| Sbjct 10622269 TATCCAGAAAGAGTCTACCCTCCATTTGGTG 10622299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||| | |||||||| | ||||| |||| || ||| | Sbjct 22900209 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 22900268 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || || || || || || || || || |||||| Sbjct 22900269 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 22900328 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 ||||| || |||| || ||| ||||| || ||||||| | | || || |||||||| Sbjct 22900329 CAAAGGCTTATTTTCGCCGGAAAACAGCTAGAAGATGGCCG-CACGTTGGCTGATTACAA 22900387 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||| || || ||||||||| | || || || Sbjct 22900388 TATCCAGAAGGAATCCACCCTCCACTTGGT 22900417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445090527678720