Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq6 89.7 5e-13
>seq6
Length=25113588
Score = 89.7 bits (98), Expect = 5e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233
|||||| | ||||| || || | ||||||||| | || || | || || || || |
Sbjct 10622546 ATGCAAATCTTTGTGAAGACCCTTACCGGAAAAACCATTACTTTGGAGGTTGAGAGTTCA 10622605
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| || ||||| | || || |||||| || ||||| || || || || |||||
Sbjct 10622606 -GACACAATCGATAATGTCAAGGCCAAAATTCAGGACAAAGAAGGGATCCCACCAGATCA 10622664
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| |||||||| | || || ||||| || || |||| | | | | | ||||||||
Sbjct 10622665 GCAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGGACTCTTGCGGATTACAA 10622724
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386
|||||| || ||||| ||| |||| | |||||
Sbjct 10622725 TATTCAGAAGGAATCAACCCTTCACCTTGTGTT 10622757
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| |||||| | || || || | ||||| |||| || || |
Sbjct 906102 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 906043
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | || || ||| ||| || || || || || || || || |||
Sbjct 906042 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 905983
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| ||| | || | || ||| ||||| || ||||||| | | | | | ||||||||||
Sbjct 905982 CAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGACCGATTACAAT 905923
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| || |||||||| ||| | || || || | | || ||||| ||
Sbjct 905922 ATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTTAAGAGGTGG 905876
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233
||||| | ||||| || ||||| || || ||| | ||||| |||| || || || |
Sbjct 10622090 ATGCAGATCTTTGTGAAGACATTGACTGGTAAAACAATCACTCTCGAGGTTGAGAGTTCA 10622149
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
|| ||||| || | || ||| || || ||||||||||| || || || || ||
Sbjct 10622150 -GACACTATTGACAATGTTAAAGCTAAGATCCAGGATAAAGAGGGAATCCCACCAGACCA 10622208
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| ||||| || | || || ||||| || ||||||| | | | || || |||||
Sbjct 10622209 GCAGAGACTTATCTTCGCTGGGAAACAGCTTGAAGATGGTCGTACACTCGCTGACTACAA 10622268
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384
||| || ||||| || ||| | ||||| |||
Sbjct 10622269 TATCCAGAAAGAGTCTACCCTCCATTTGGTG 10622299
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || ||| | |||||||| | ||||| |||| || ||| |
Sbjct 22900209 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGCTCT 22900268
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || ||||| | || || || || || || || || || || || ||||||
Sbjct 22900269 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCAG 22900328
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353
||||| || |||| || ||| ||||| || ||||||| | | || || ||||||||
Sbjct 22900329 CAAAGGCTTATTTTCGCCGGAAAACAGCTAGAAGATGGCCG-CACGTTGGCTGATTACAA 22900387
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383
||| || || ||||||||| | || || ||
Sbjct 22900388 TATCCAGAAGGAATCCACCCTCCACTTGGT 22900417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445090527678720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |