Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 5e-12 >seq4 Length=23328337 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 106353 GACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAA 106412 |||||||| || | || ||||||||||||||| |||| ||| || || ||||| ||| Sbjct 16908199 GACAAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 16908258 Query 106413 GATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||| || | | |||||||||||| || ||||| ||||| || ||| | || ||| Sbjct 16908259 GATGGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTG 16908318 Query 106473 AGGTTACGAGGAGGA 106487 ||| | |||| ||| Sbjct 16908319 AGGCTCAGAGGTGGA 16908333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402326187239168