Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7 203 5e-46 seq5 145 1e-28 >seq7 Length=24649197 Score = 203 bits (224), Expect = 5e-46 Identities = 364/527 (69%), Gaps = 11/527 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| |||| | ||| ||||| |||||| | |||| |||| || ||||| Sbjct 21840928 TGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCGTCCTTC 21840870 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTG---TCGCTGAGC 1455869 ||||||||||| || ||||| ||| |||| | |||||| || || | Sbjct 21840869 TGGACCGCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTATCC 21840810 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 ||||||| || || |||||||| |||||||||||||| ||| ||||| || || || Sbjct 21840809 AACGACGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTT-GCCGCATCAGACGGAAT 21840751 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| ||||| || | ||| || ||| || || || | |||| || ||| Sbjct 21840750 CGTTCTGGAGAATCTCTCGACCCGATTCATGTCCGATGTTCAGATCTCAGAAGCTCGTGC 21840691 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||| ||||| ||||| || || || ||||| | || ||||| | Sbjct 21840690 CTTCTACGGATTCCAAATCGCGATCGAGAATATTCATTCTGAGATGTATAGTCTCCTTCT 21840631 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 |||||| ||| |||| ||| |||| || || ||||||||||| ||||| || | Sbjct 21840630 CGACACTTACATCAAAGACAACAAAGAGAGAGATCATCTCTTTCGCGCAATCGAAACCAT 21840571 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 || | |||| |||||| || || ||||| ||||| ||||||||| || ||| | Sbjct 21840570 TCCTTGTGTGACGAAAAAAGCAGAATGGGCTATGAAATGGATCAAC-----GGATCTCAA 21840516 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 ||| || ||| | |||| | ||||| |||| || || || || ||||| || || Sbjct 21840515 AGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGC 21840456 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || || | || || ||| | ||||| || || | ||||| || || Sbjct 21840455 TTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACT 21840409 >seq5 Length=21221946 Score = 145 bits (160), Expect = 1e-28 Identities = 276/403 (68%), Gaps = 5/403 (1%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | ||||| | ||| |||||||||||| |||||| |||| || ||||| Sbjct 3397817 TGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAG-CCGAAGCATCCTTC 3397759 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 |||||||| || || || || || |||| | |||||| || | | Sbjct 3397758 TGGACCGCTGAAGAAGTAGATCTATCACAGGACAACCGCGACTGGGAAAACAATCTCAAC 3397699 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| || || || |||||||| || |||||||| ||| |||||||| || || || Sbjct 3397698 GACGGTGAACGTCACTTCATCAAACATGTCCTCGC-TTTCTTCGCCGCATCTGACGGAAT 3397640 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| ||||| || || || || ||| || || ||| | | ||||| ||| Sbjct 3397639 CGTATTAGAGAATCTCGCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGC 3397580 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||||||||| || ||||| |||||||| || | || ||||| | Sbjct 3397579 TTTCTACGGTTTCCAGATCGCGATTGAAAATATCCACTCGGAGATGTATAGTCTCCTTCT 3397520 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 ||| || || |||| || |||| || || |||||||| ||||| || ||| | Sbjct 3397519 CGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATTGAAACGAT 3397460 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 || | || ||| || || | ||||||||||| |||||| Sbjct 3397459 TCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATC 3397417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177744069520752