Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq7 203 5e-46
seq5 145 1e-28
>seq7
Length=24649197
Score = 203 bits (224), Expect = 5e-46
Identities = 364/527 (69%), Gaps = 11/527 (2%)
Strand=Plus/Minus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| |||| |||| | ||| ||||| |||||| | |||| |||| || |||||
Sbjct 21840928 TGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCGTCCTTC 21840870
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTG---TCGCTGAGC 1455869
||||||||||| || ||||| ||| |||| | |||||| || || |
Sbjct 21840869 TGGACCGCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTATCC 21840810
Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929
||||||| || || |||||||| |||||||||||||| ||| ||||| || || ||
Sbjct 21840809 AACGACGAACGTCACTTCATCAAACACGTCCTCGCCTTCTTT-GCCGCATCAGACGGAAT 21840751
Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989
||| ||||| || | ||| || ||| || || || | |||| || |||
Sbjct 21840750 CGTTCTGGAGAATCTCTCGACCCGATTCATGTCCGATGTTCAGATCTCAGAAGCTCGTGC 21840691
Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049
|| ||||| ||||| ||||| ||||| || || || ||||| | || ||||| |
Sbjct 21840690 CTTCTACGGATTCCAAATCGCGATCGAGAATATTCATTCTGAGATGTATAGTCTCCTTCT 21840631
Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109
|||||| ||| |||| ||| |||| || || ||||||||||| ||||| || |
Sbjct 21840630 CGACACTTACATCAAAGACAACAAAGAGAGAGATCATCTCTTTCGCGCAATCGAAACCAT 21840571
Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169
|| | |||| |||||| || || ||||| ||||| ||||||||| || ||| |
Sbjct 21840570 TCCTTGTGTGACGAAAAAAGCAGAATGGGCTATGAAATGGATCAAC-----GGATCTCAA 21840516
Query 1456170 CACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228
||| || ||| | |||| | ||||| |||| || || || || ||||| || ||
Sbjct 21840515 AGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGC 21840456
Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|| || | || || ||| | ||||| || || | ||||| || ||
Sbjct 21840455 TTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACT 21840409
>seq5
Length=21221946
Score = 145 bits (160), Expect = 1e-28
Identities = 276/403 (68%), Gaps = 5/403 (1%)
Strand=Plus/Minus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| || | ||||| | ||| |||||||||||| |||||| |||| || |||||
Sbjct 3397817 TGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAG-CCGAAGCATCCTTC 3397759
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869
|||||||| || || || || || |||| | |||||| || | |
Sbjct 3397758 TGGACCGCTGAAGAAGTAGATCTATCACAGGACAACCGCGACTGGGAAAACAATCTCAAC 3397699
Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929
|||| || || || |||||||| || |||||||| ||| |||||||| || || ||
Sbjct 3397698 GACGGTGAACGTCACTTCATCAAACATGTCCTCGC-TTTCTTCGCCGCATCTGACGGAAT 3397640
Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989
||| ||||| || || || || ||| || || ||| | | ||||| |||
Sbjct 3397639 CGTATTAGAGAATCTCGCTTCTCGATTCATGTCCGATGTTCAAGTCTCGGAGGCGCGTGC 3397580
Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049
|| ||||| ||||||||||| || ||||| |||||||| || | || ||||| |
Sbjct 3397579 TTTCTACGGTTTCCAGATCGCGATTGAAAATATCCACTCGGAGATGTATAGTCTCCTTCT 3397520
Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109
||| || || |||| || |||| || || |||||||| ||||| || ||| |
Sbjct 3397519 CGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATTGAAACGAT 3397460
Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152
|| | || ||| || || | ||||||||||| ||||||
Sbjct 3397459 TCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATC 3397417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177744069520752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |