Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7 246 4e-60 seq5 163 4e-35 seq4 116 5e-21 >seq7 Length=24649197 Score = 246 bits (272), Expect = 4e-60 Identities = 613/917 (67%), Gaps = 23/917 (3%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || |||||||| | ||||| ||||| |||||||| |||| | || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||| ||||||| |||||| | || ||| || | | || | | | | Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 || ||||| |||||||| || ||||| |||||| |||| |||||| || | | Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | || || || || | ||||||| | || || || || || || | ||| Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299 Query 39565 CGATGTTAC---TACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGC 39621 |||| | | | | |||||| | | | | || || | || | || || || || Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAAGC 21840356 Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681 ||| ||||| || || || || ||||| ||| ||||||||||| |||||||||||||| Sbjct 21840357 GAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGG 21840416 Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGC 39740 ||||| ||| || || || | ||| ||||| | | |||||| | ||||| ||||| || | Sbjct 21840417 CATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATAC 21840475 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCATTATGTATCCA 39798 |||| || ||||| || || | |||||| || | ||| ||| | || ||||| Sbjct 21840476 CTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGT-TG-ATCCA 21840533 Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 ||| ||||| || ||||| ||| | |||||||| || ||||| || || |||||| Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593 Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918 || || | | || | | ||||| | || || || | | ||||||||||| || || Sbjct 21840594 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653 Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978 ||| || || || ||||| || || |||||||| || | ||||| | || || || Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713 Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 || || |||| || | ||| || || ||||| || |||||||| || Sbjct 21840714 ATCGGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGAA 21840773 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCG--GG--TGTCAATTTATTCCAGTC-- 40092 || | || ||||| || || | ||| ||| || || | ||| | |||||| Sbjct 21840774 GGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCGC 21840832 Query 40093 -ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151 |||| |||| || | ||| |||||||| || ||||| || ||||| || || || | Sbjct 21840833 GATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCT 21840889 Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 ||||||| | ||| || | | ||||| ||||| || ||| |||| || ||| || Sbjct 21840890 TGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTTG 21840949 Query 40212 TTGCAAGGATGGGTTCC 40228 || ||||| |||||| Sbjct 21840950 GTGTTAGGATTGGTTCC 21840966 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| ||| || Sbjct 506604 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATGCC 506545 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| ||||| || ||| ||| |||||||| |||| || || || ||| || Sbjct 506544 ATTAGATGCTCCATTGGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 506485 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || ||| ||| || | |||||| |||||||||||||||||| Sbjct 506484 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 506425 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||||||||| ||||| | ||||| ||||| Sbjct 506424 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 506383 Score = 102 bits (112), Expect = 1e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||||||| ||||||| || |||||| ||||| | | ||||||| || || || Sbjct 508369 TAAAACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAG 508310 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 ||| || ||||| ||||| ||||| ||||||||||| | | |||||| | |||| Sbjct 508309 AATCTGGCTGGTTGAAGCAGTAGGCATTGGTGCCACCAAAAGAGAATTTCTGATTCCATT 508250 Query 68853 TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCA 68912 || || |||| | ||| ||| ||||| | |||||||| | || ||||| Sbjct 508249 CTTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGGTCAGATGGAATTACGTTCCA 508190 Query 68913 AAGATCGTATTGTAGAATTCC 68933 | ||| ||| |||||||| Sbjct 508189 CATATCAGGTTGAAGAATTCC 508169 Score = 89.7 bits (98), Expect = 7e-13 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 ||| |||||||||||||| | || || || |||||||||||||| ||||||| | | || Sbjct 507857 AAGGATAAATGCATCTGCAAGACCTTGTACACCAATACCGATAGGCCTATGTCGCATGTT 507798 Query 69141 TGAACTTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| ||| || ||| | | ||||||| ||| | ||||||||| || |||||||| Sbjct 507797 TGAGGTTTTTGCAGTCTCCACT-GGATAATGATTCACATCTATAATCTTGTTAAGATT 507741 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | || || | ||||||||||| |||||||||||| | ||| | | || | Sbjct 506272 GTTCCTGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 506213 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| ||||| || || ||||| || || || || | | || | ||||| | Sbjct 506212 TAAGTTTTGATAGCGGAATCGATATCTTCCTTGTGGATGCCAACAGAAACCCTCATCAGC 506153 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| ||| ||| | | ||| || ||||||||| | || || Sbjct 506152 ATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAAGC 506093 Query 70171 GTTTTAAACCCAAAATA 70187 |||||||| ||||| || Sbjct 506092 GTTTTAAATCCAAAGTA 506076 >seq5 Length=21221946 Score = 163 bits (180), Expect = 4e-35 Identities = 287/416 (69%), Gaps = 3/416 (1%) Strand=Plus/Plus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| ||| ||||| | |||||||||| || ||||| || ||||| || ||| | Sbjct 3397418 ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGA 3397477 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 ||||||| || | | || | ||||||| | ||| ||||| | | ||||||||||| Sbjct 3397478 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 3397537 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || ||||| ||||||||||| ||||| || ||||| ||| | || || | | | Sbjct 3397538 TCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 3397597 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || || || || |||| || | ||| || || ||||| ||| ||||| Sbjct 3397598 TGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCG 3397657 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAAT-TTATTCCAG 40090 || || || | |||||||| || || | |||| || | || | | || | |||| Sbjct 3397658 AAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAG 3397717 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | | || | ||||| ||||||||||||||| ||||| || || || || || ||| Sbjct 3397718 TCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTT 3397777 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 |||||||| | ||| || | | || || ||||| || ||| ||||| | ||| Sbjct 3397778 TTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833 Score = 93.3 bits (102), Expect = 6e-14 Identities = 279/426 (65%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || |||||||| |||||||| |||||||||||||| |||| | || ||| Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||| ||||||||||||| || || || || | || | | | Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 | ||||| |||||||| || || || |||||| |||| ||||| || | | Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || || | ||||||| | ||||| || || || || | || Sbjct 3396936 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGAT 3396995 Query 39565 CGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 || | || || ||||| | | | | | || ||| || | | | ||| ||| Sbjct 3396996 TGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGCG 3397053 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || || || ||||| || || || | || |||||||| |||||||| ||||||||| Sbjct 3397054 AAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGGC 3397113 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGATGCC 39741 || || || || || || ||||| || || | | |||||| ||| || |||||||| || Sbjct 3397114 ATGAGTCCTCGTTTCTTTAGCCAGAAGATTG-AACAAAAGCTTCCGGAGAAGAAGATACC 3397172 Query 39742 TTCTAC 39747 ||| || Sbjct 3397173 TTCAAC 3397178 >seq4 Length=23328337 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 502017 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACC 501958 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| || ||||| |||| || |||||| || || Sbjct 501957 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 501898 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || ||||| || ||| || | |||||| ||| | ||| || || || Sbjct 501897 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 501838 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||||||| ||||| | ||||| ||||| Sbjct 501837 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| || || || | ||||||||||| |||||||||||| | | ||| | || || Sbjct 501677 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 501618 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||| || || || || ||||| || || || || | || || | ||||| Sbjct 501617 GTAAGTTTGGATTGCGGAATCAATATCGTCCTTGTGGATACCAACAGCAACCCTCATCAG 501558 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || ||||| | ||| || | | | | |||||| ||||| ||| | || || Sbjct 501557 CATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAAG 501498 Query 70170 AGTTTTAAACCCAAAATA 70187 ||||||||| ||||| || Sbjct 501497 AGTTTTAAATCCAAAGTA 501480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902823893440