Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq7 246 4e-60
seq5 163 4e-35
seq4 116 5e-21
>seq7
Length=24649197
Score = 246 bits (272), Expect = 4e-60
Identities = 613/917 (67%), Gaps = 23/917 (3%)
Strand=Plus/Plus
Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
||| || || |||||||| | ||||| ||||| |||||||| |||| | || ||
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444
|||||| ||||||| |||||| | || ||| || | | || | | | |
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
|| ||||| |||||||| || ||||| |||||| |||| |||||| || | |
Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
| || || || || | ||||||| | || || || || || || | |||
Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299
Query 39565 CGATGTTAC---TACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGC 39621
|||| | | | | |||||| | | | | || || | || | || || || ||
Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCT-TAGTTCTAAGAA--GACTATAGATCAAACAAGC 21840356
Query 39622 GAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGG 39681
||| ||||| || || || || ||||| ||| ||||||||||| ||||||||||||||
Sbjct 21840357 GAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGG 21840416
Query 39682 CATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGC 39740
||||| ||| || || || | ||| ||||| | | |||||| | ||||| ||||| || |
Sbjct 21840417 CATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATAC 21840475
Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCATTATGTATCCA 39798
|||| || ||||| || || | |||||| || | ||| ||| | || |||||
Sbjct 21840476 CTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGT-TG-ATCCA 21840533
Query 39799 CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858
||| ||||| || ||||| ||| | |||||||| || ||||| || || ||||||
Sbjct 21840534 TTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAG 21840593
Query 39859 ATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGA 39918
|| || | | || | | ||||| | || || || | | ||||||||||| || ||
Sbjct 21840594 ATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGA 21840653
Query 39919 ATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTAC 39978
||| || || || ||||| || || |||||||| || | ||||| | || || ||
Sbjct 21840654 ATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAAC 21840713
Query 39979 CTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038
|| || |||| || | ||| || || ||||| || |||||||| ||
Sbjct 21840714 ATCGGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGAA 21840773
Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCG--GG--TGTCAATTTATTCCAGTC-- 40092
|| | || ||||| || || | ||| ||| || || | ||| | ||||||
Sbjct 21840774 GGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCGC 21840832
Query 40093 -ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTT 40151
|||| |||| || | ||| |||||||| || ||||| || ||||| || || || |
Sbjct 21840833 GATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCT 21840889
Query 40152 TGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211
||||||| | ||| || | | ||||| ||||| || ||| |||| || ||| ||
Sbjct 21840890 TGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTTG 21840949
Query 40212 TTGCAAGGATGGGTTCC 40228
|| ||||| ||||||
Sbjct 21840950 GTGTTAGGATTGGTTCC 21840966
Score = 122 bits (134), Expect = 1e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | || | ||||| | ||| | || | |||||| |||| ||| ||
Sbjct 506604 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATGCC 506545
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| ||||| || ||| ||| |||||||| |||| || || || ||| ||
Sbjct 506544 ATTAGATGCTCCATTGGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGA 506485
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || || || ||| ||| || | |||||| ||||||||||||||||||
Sbjct 506484 AACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATAT 506425
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| ||||||||||| ||||| | ||||| |||||
Sbjct 506424 CCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 506383
Score = 102 bits (112), Expect = 1e-16
Identities = 143/201 (71%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792
||| ||||||||| ||||||| || |||||| ||||| | | ||||||| || || ||
Sbjct 508369 TAAAACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAG 508310
Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852
||| || ||||| ||||| ||||| ||||||||||| | | |||||| | ||||
Sbjct 508309 AATCTGGCTGGTTGAAGCAGTAGGCATTGGTGCCACCAAAAGAGAATTTCTGATTCCATT 508250
Query 68853 TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCA 68912
|| || |||| | ||| ||| ||||| | |||||||| | || |||||
Sbjct 508249 CTTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGGTCAGATGGAATTACGTTCCA 508190
Query 68913 AAGATCGTATTGTAGAATTCC 68933
| ||| ||| ||||||||
Sbjct 508189 CATATCAGGTTGAAGAATTCC 508169
Score = 89.7 bits (98), Expect = 7e-13
Identities = 92/118 (78%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140
||| |||||||||||||| | || || || |||||||||||||| ||||||| | | ||
Sbjct 507857 AAGGATAAATGCATCTGCAAGACCTTGTACACCAATACCGATAGGCCTATGTCGCATGTT 507798
Query 69141 TGAACTTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197
||| ||| || ||| | | ||||||| ||| | ||||||||| || ||||||||
Sbjct 507797 TGAGGTTTTTGCAGTCTCCACT-GGATAATGATTCACATCTATAATCTTGTTAAGATT 507741
Score = 86.0 bits (94), Expect = 9e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||| | || || | ||||||||||| |||||||||||| | ||| | | || |
Sbjct 506272 GTTCCTGAGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 506213
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| |||| ||||| || || ||||| || || || || | | || | ||||| |
Sbjct 506212 TAAGTTTTGATAGCGGAATCGATATCTTCCTTGTGGATGCCAACAGAAACCCTCATCAGC 506153
Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170
|| || ||||| | ||| ||| ||| | | ||| || ||||||||| | || ||
Sbjct 506152 ATGTGTTGAGGCCTTTCAACCACTTTGCCTTGCACTTTTAAGAGGTATGATCTCTCAAGC 506093
Query 70171 GTTTTAAACCCAAAATA 70187
|||||||| ||||| ||
Sbjct 506092 GTTTTAAATCCAAAGTA 506076
>seq5
Length=21221946
Score = 163 bits (180), Expect = 4e-35
Identities = 287/416 (69%), Gaps = 3/416 (1%)
Strand=Plus/Plus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||| ||| ||||| | |||||||||| || ||||| || ||||| || ||| |
Sbjct 3397418 ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGA 3397477
Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913
||||||| || | | || | ||||||| | ||| ||||| | | |||||||||||
Sbjct 3397478 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 3397537
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973
|| || ||||| ||||||||||| ||||| || ||||| ||| | || || | | |
Sbjct 3397538 TCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 3397597
Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033
|| || || || |||| || | ||| || || ||||| ||| |||||
Sbjct 3397598 TGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCG 3397657
Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAAT-TTATTCCAG 40090
|| || || | |||||||| || || | |||| || | || | | || | ||||
Sbjct 3397658 AAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAG 3397717
Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150
|| | | || | ||||| ||||||||||||||| ||||| || || || || || |||
Sbjct 3397718 TCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTT 3397777
Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206
|||||||| | ||| || | | || || ||||| || ||| ||||| | |||
Sbjct 3397778 TTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833
Score = 93.3 bits (102), Expect = 6e-14
Identities = 279/426 (65%), Gaps = 6/426 (1%)
Strand=Plus/Plus
Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
||| || || |||||||| |||||||| |||||||||||||| |||| | || |||
Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444
|||||| ||||||||||||| || || || || | || | | |
Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
| ||||| |||||||| || || || |||||| |||| ||||| || | |
Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
|| || || || | ||||||| | ||||| || || || || | ||
Sbjct 3396936 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGAT 3396995
Query 39565 CGATGTTACTACCTCATCACTCGG--TGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622
|| | || || ||||| | | | | | || ||| || | | | ||| |||
Sbjct 3396996 TGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGCG 3397053
Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682
|| || || ||||| || || || | || |||||||| |||||||| |||||||||
Sbjct 3397054 AAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGGC 3397113
Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGAAGATGCC 39741
|| || || || || || ||||| || || | | |||||| ||| || |||||||| ||
Sbjct 3397114 ATGAGTCCTCGTTTCTTTAGCCAGAAGATTG-AACAAAAGCTTCCGGAGAAGAAGATACC 3397172
Query 39742 TTCTAC 39747
||| ||
Sbjct 3397173 TTCAAC 3397178
>seq4
Length=23328337
Score = 116 bits (128), Expect = 5e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| || || | || | ||||| | ||| | || | |||||| |||| ||||||
Sbjct 502017 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACC 501958
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | |||||||| ||| ||| || ||||| |||| || |||||| || ||
Sbjct 501957 ATTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGA 501898
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
| ||| || ||||| || ||| || | |||||| ||| | ||| || || ||
Sbjct 501897 AACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAAT 501838
Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971
||||| |||||||||||| ||||| | ||||| |||||
Sbjct 501837 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796
Score = 96.9 bits (106), Expect = 5e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049
|||||| || || || | ||||||||||| |||||||||||| | | ||| | || ||
Sbjct 501677 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 501618
Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109
||| |||| || || || || ||||| || || || || | || || | |||||
Sbjct 501617 GTAAGTTTGGATTGCGGAATCAATATCGTCCTTGTGGATACCAACAGCAACCCTCATCAG 501558
Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169
||| || ||||| | ||| || | | | | |||||| ||||| ||| | || ||
Sbjct 501557 CATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAAG 501498
Query 70170 AGTTTTAAACCCAAAATA 70187
||||||||| ||||| ||
Sbjct 501497 AGTTTTAAATCCAAAGTA 501480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686902823893440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |