Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7 113 4e-20 >seq7 Length=24649197 Score = 113 bits (124), Expect = 4e-20 Identities = 256/378 (68%), Gaps = 18/378 (5%) Strand=Plus/Minus Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 || ||||| | ||||||| || || || || || ||||| || || || |||||| Sbjct 21840716 GATGTTCAGATCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATCGAGAATATT 21840657 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035 ||||| || ||||| ||||| || | || || ||||||||||| | |||| || Sbjct 21840656 CATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAACAAAGAGAGAGAT 21840597 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC---TGCGATTAAACATAAAGCAGACTGGGCC 44092 | | ||| || || ||||| | || || || ||| |||||||| ||||| Sbjct 21840596 CATCTCTTTCGCGCAATCGAAACCATTCCTTGTGTGACGAAA---AAAGCAGAATGGGCT 21840540 Query 44093 CTTAAATGGATAAA-----TTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | |||||||| || ||||| | ||| | |||| || | || || ||||| Sbjct 21840539 ATGAAATGGATCAACGGATCTCAAA-GCTTCGCT--GAGA--GAATCGTAGCTTTTGCTT 21840485 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206 || ||||| || ||||| || || | | |||| | ||||| ||||| ||||||||| Sbjct 21840484 GCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTG-TTCGATATTCTGGTTGAAGAAACGA 21840426 Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266 ||||| |||||||| | || || || || || || || | || ||||| | || Sbjct 21840425 GGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 21840366 Query 44267 TGCGATTTTGCTTGCTTG 44284 || ||||| ||||| ||| Sbjct 21840365 TGTGATTTCGCTTGTTTG 21840348 Score = 93.3 bits (102), Expect = 3e-14 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 |||| ||| ||||| || ||| ||| || ||||| || | || | | |||||| Sbjct 2728459 ATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAGCTGATGG 2728518 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTGTCATGT 41111 || | || || || || |||| |||||||| ||| ||| |||| |||||||||||| Sbjct 2728519 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTT-GCAGATGGAGAACTGTCATGT 2728577 Query 41112 CAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164 ||| ||||||| | |||| || ||||| || || || ||||||||||| || Sbjct 2728578 CAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGC 2728630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452628579480