Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq7 113 4e-20
>seq7
Length=24649197
Score = 113 bits (124), Expect = 4e-20
Identities = 256/378 (68%), Gaps = 18/378 (5%)
Strand=Plus/Minus
Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975
|| ||||| | ||||||| || || || || || ||||| || || || ||||||
Sbjct 21840716 GATGTTCAGATCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATCGAGAATATT 21840657
Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCAT 44035
||||| || ||||| ||||| || | || || ||||||||||| | |||| ||
Sbjct 21840656 CATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAACAAAGAGAGAGAT 21840597
Query 44036 CGATTGTTTAATGCGATAGAAACAGTACC---TGCGATTAAACATAAAGCAGACTGGGCC 44092
| | ||| || || ||||| | || || || ||| |||||||| |||||
Sbjct 21840596 CATCTCTTTCGCGCAATCGAAACCATTCCTTGTGTGACGAAA---AAAGCAGAATGGGCT 21840540
Query 44093 CTTAAATGGATAAA-----TTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAG 44147
| |||||||| || ||||| | ||| | |||| || | || || |||||
Sbjct 21840539 ATGAAATGGATCAACGGATCTCAAA-GCTTCGCT--GAGA--GAATCGTAGCTTTTGCTT 21840485
Query 44148 TTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGA 44206
|| ||||| || ||||| || || | | |||| | ||||| ||||| |||||||||
Sbjct 21840484 GCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTG-TTCGATATTCTGGTTGAAGAAACGA 21840426
Query 44207 GGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACAT 44266
||||| |||||||| | || || || || || || || | || ||||| | ||
Sbjct 21840425 GGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 21840366
Query 44267 TGCGATTTTGCTTGCTTG 44284
|| ||||| ||||| |||
Sbjct 21840365 TGTGATTTCGCTTGTTTG 21840348
Score = 93.3 bits (102), Expect = 3e-14
Identities = 126/173 (73%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 40993 ATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052
|||| ||| ||||| || ||| ||| || ||||| || | || | | ||||||
Sbjct 2728459 ATCCTGATGATCGACGGATTATAATGTCGGCTTGGAATCCTTCTGATCTTAAGCTGATGG 2728518
Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCA-ATGGTGAACTGTCATGT 41111
|| | || || || || |||| |||||||| ||| ||| |||| ||||||||||||
Sbjct 2728519 CACTTCCTCCATGCCACATGTTTGCACAGTTTTATGTT-GCAGATGGAGAACTGTCATGT 2728577
Query 41112 CAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGC 41164
||| ||||||| | |||| || ||||| || || || ||||||||||| ||
Sbjct 2728578 CAAATGTATCAGCGCTCAGCCGATATGGGTCTCGGCGTACCGTTTAACATTGC 2728630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397452628579480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |