Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 147 3e-30 seq4 143 3e-29 seq8 116 5e-21 >seq1 Length=33132539 Score = 147 bits (162), Expect = 3e-30 Identities = 251/361 (70%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||| ||||||||||| || || | ||||||| || |||||||| |||||||| || Sbjct 2327078 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2327137 Query 11597 GGCATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 |||| |||| | | |||| | || || ||||| || ||||| | ||| ||| Sbjct 2327138 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2327194 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 || ||||| |||||| ||| ||| || |||||||| || ||| |||||| ||| Sbjct 2327195 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2327254 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATT 11771 || ||||||||||| ||||| | | | ||| ||| | ||| || ||| | || Sbjct 2327255 CCGACAAACATCTCAACAAACTCAGAACCCGAG--ATGGAAAAGAAGGGCACACCGGCTT 2327312 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 |||| || |||||| || || ||||| || || ||||| || ||| | || || Sbjct 2327313 CACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAA 2327372 Query 11832 CGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCA 11891 | ||| ||||||| ||||||| | || | ||||| || | ||| ||||| |||| Sbjct 2327373 CACCTTTGGGGATCCGGGCACCAACTGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 2327432 Query 11892 C 11892 | Sbjct 2327433 C 2327433 Score = 132 bits (146), Expect = 6e-26 Identities = 200/280 (71%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| || |||||||||||||||||| || Sbjct 26184130 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 26184187 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| |||||| Sbjct 26184188 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 26184247 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || ||| | || | || || | ||| | ||| || ||||| ||||| Sbjct 26184248 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCAACACC 26184306 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||| | ||||||||| | | ||| | ||| || ||| || || || || || Sbjct 26184307 CACAAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCCCC 26184366 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 || | || | || ||||| ||||| |||||||| ||| Sbjct 26184367 AGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 26184406 >seq4 Length=23328337 Score = 143 bits (158), Expect = 3e-29 Identities = 281/414 (68%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | | ||| || || |||| || | || ||||| | | ||||| Sbjct 14548835 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 14548776 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 ||||||||||| || || | ||||| | || |||||||| |||||||| || Sbjct 14548775 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCTCC--- 14548719 Query 11602 ACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 |||| || | | | |||| | || || ||||| || ||||| | ||||||||| || Sbjct 14548718 ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACGAAGACAATGCA 14548659 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || || || ||| | | || ||||| || || ||| |||||| |||||||| Sbjct 14548658 AGGAGCGTTCTCTTTGGCTTTCTTGAAAAGATCACGGACTCTTGAGGCACCAACACCAAC 14548599 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||||||||| ||||| | | ||||| || ||| || ||| | |||||| || Sbjct 14548598 AAACATCTCAACAAACTCAGAACCAGAGATGGAGAAGAAAGGTACACCAGCTTCACCAGC 14548539 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 |||||| || | ||||| || || ||||| || ||| || || | ||| Sbjct 14548538 AATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCTTT 14548479 Query 11839 GGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||||||||||||||| || |||||||||||| ||| ||||| ||||| Sbjct 14548478 TGGGATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCAC 14548425 >seq8 Length=22951293 Score = 116 bits (128), Expect = 5e-21 Identities = 196/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || ||||||||||||||||| | Sbjct 6867590 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATT--CCCA 6867647 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | ||| ||||| | | |||| | ||||| ||||||||||||||||| || |||||| Sbjct 6867648 CCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATA 6867707 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | || | ||||| | ||| | ||| || ||||||||||| Sbjct 6867708 CAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCACACC 6867766 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||| | ||||||||| | | |||| ||| | ||| || || | ||| || Sbjct 6867767 AACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTCTCC 6867826 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || | || ||||| |||||||| || Sbjct 6867827 AGCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGG 6867865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026536121600