Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 9e-24
seq8 96.9 4e-15
seq7 91.5 2e-13
seq5 84.2 3e-11
>seq1
Length=33132539
Score = 125 bits (138), Expect = 9e-24
Identities = 276/407 (68%), Gaps = 10/407 (2%)
Strand=Plus/Plus
Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209
||||| |||||||||||||||| ||| ||||| | ||| ||||| | ||||||||| |
Sbjct 2327078 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2327137
Query 14210 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266
|||| || | | | |||| |||| || || || |||||||| | ||||||
Sbjct 2327138 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2327194
Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326
|| ||||| |||||| ||| || || | ||| || ||||| |||||| |||
Sbjct 2327195 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2327254
Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385
|| ||||||||||| ||||| | | | | | || | | |||||| || | |||
Sbjct 2327255 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGCACACCGGCTTC 2327313
Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGC 14445
||| || |||||| || || ||||| ||||| || || || || | || || |
Sbjct 2327314 ACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAAC 2327373
Query 14446 ACCACGTGGGATCCTGGCACC-ACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCA 14504
||| ||||||| |||||| |||| || | | | ||||| | || || || ||||
Sbjct 2327374 ACCTTTGGGGATCCGGGCACCAACTG-CAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 2327432
Query 14505 CGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCA 14551
| | ||| || || | ||| || |||||| || |||| |||
Sbjct 2327433 CCACTTCCATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCA 2327479
>seq8
Length=22951293
Score = 96.9 bits (106), Expect = 4e-15
Identities = 192/279 (69%), Gaps = 4/279 (1%)
Strand=Plus/Plus
Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211
||| ||||||||||||||||| || ||||| || || ||||| | ||||||||| ||
Sbjct 6867590 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTCCCA-C 6867648
Query 14212 CATACCACCC-GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270
|| | ||| || | | |||| |||| || || ||||| ||||| || || || ||||
Sbjct 6867649 CACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATAC 6867708
Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329
| || | ||| || || ||||| | ||| | ||||| ||||| |||||
Sbjct 6867709 AAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCACACCA 6867767
Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389
||||| | ||||||||| | | || | ||| | ||| || || || ||| ||
Sbjct 6867768 ACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTCTCCA 6867827
Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428
|| | |||| || | || ||||||||||| || |||
Sbjct 6867828 GCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGGT 6867866
>seq7
Length=24649197
Score = 91.5 bits (100), Expect = 2e-13
Identities = 182/265 (69%), Gaps = 11/265 (4%)
Strand=Plus/Plus
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| ||||| ||||| | || || | ||| || ||||| || || ||||| | |||
Sbjct 21840366 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 21840425
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|| |||||||||||||| |||| |||||| ||||||||||| || || || || ||
Sbjct 21840426 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 21840485
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA--CTTTGTATCAAACCACTTCATC 130204
|| || || | || | |||||| ||| | || | ||| | ||| |||||
Sbjct 21840486 AGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG-----ATCCATTTCATA 21840540
Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-T 130263
||||| | || |||||| | ||| || | ||| | ||| || |||||| | | |
Sbjct 21840541 GCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGATCT 21840600
Query 130264 CT-TTTCTGATGGATCTTTGATGTA 130287
|| | | || || |||||||||||
Sbjct 21840601 CTCTCTTTGTTG--TCTTTGATGTA 21840623
>seq5
Length=21221946
Score = 84.2 bits (92), Expect = 3e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983
||||||||||||| | || |||||||| || || || || | ||||||||||||||
Sbjct 15547860 GAATTACCGAGAAGCGTACGGTCTCTTCGCATGTAACGGAATCTTGTTCAACCACGAGTC 15547801
Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 12022
||| || ||||| | |||||||||| | |||||||||
Sbjct 15547800 ACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCAC 15547762
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618429819613760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |