Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 125 9e-24 seq8 96.9 4e-15 seq7 91.5 2e-13 seq5 84.2 3e-11 >seq1 Length=33132539 Score = 125 bits (138), Expect = 9e-24 Identities = 276/407 (68%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 ||||| |||||||||||||||| ||| ||||| | ||| ||||| | ||||||||| | Sbjct 2327078 TCAAAACCATCCATCTCAGTCAGGAGCTGATTAAGGGTCTGTTCTCTTTCATCATTACCT 2327137 Query 14210 GGCATACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 |||| || | | | |||| |||| || || || |||||||| | |||||| Sbjct 2327138 CC---ACCAATTCCAGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCCACGAAAACA 2327194 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 || ||||| |||||| ||| || || | ||| || ||||| |||||| ||| Sbjct 2327195 ATGCATGGAGCATTTTCTTTGGCTTTTTTGAAAAGATCGCGGACTCTTGAGGCACCAACA 2327254 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385 || ||||||||||| ||||| | | | | | || | | |||||| || | ||| Sbjct 2327255 CCGACAAACATCTCAACAAACTCAGAACCCG-AGATGGAAAAGAAGGGCACACCGGCTTC 2327313 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGC 14445 ||| || |||||| || || ||||| ||||| || || || || | || || | Sbjct 2327314 ACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCCAGTACCAGGAGGACCAACAAGGAGAAC 2327373 Query 14446 ACCACGTGGGATCCTGGCACC-ACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCA 14504 ||| ||||||| |||||| |||| || | | | ||||| | || || || |||| Sbjct 2327374 ACCTTTGGGGATCCGGGCACCAACTG-CAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 2327432 Query 14505 CGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCCTTCAACGTCA 14551 | | ||| || || | ||| || |||||| || |||| ||| Sbjct 2327433 CCACTTCCATGAAATCCTGCTTGGCTTCGTCGACTCCAGCAACATCA 2327479 >seq8 Length=22951293 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/279 (69%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || ||||| || || ||||| | ||||||||| || Sbjct 6867590 AAACCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTCCCA-C 6867648 Query 14212 CATACCACCC-GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 14270 || | ||| || | | |||| |||| || || ||||| ||||| || || || |||| Sbjct 6867649 CACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACACAATAC 6867708 Query 14271 ATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 14329 | || | ||| || || ||||| | ||| | ||||| ||||| ||||| Sbjct 6867709 AAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCACACCA 6867767 Query 14330 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCC 14389 ||||| | ||||||||| | | || | ||| | ||| || || || ||| || Sbjct 6867768 ACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAAAAGAACGGCACTCCAGCTTCTCCA 6867827 Query 14390 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || ||||||||||| || ||| Sbjct 6867828 GCCACAGCTCTAGCCAAAAGTGTCTTCCCCGTACCCGGT 6867866 >seq7 Length=24649197 Score = 91.5 bits (100), Expect = 2e-13 Identities = 182/265 (69%), Gaps = 11/265 (4%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||| ||||| | || || | ||| || ||||| || || ||||| | ||| Sbjct 21840366 GTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCATTAAACC 21840425 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 || |||||||||||||| |||| |||||| ||||||||||| || || || || || Sbjct 21840426 TCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAGAATATACCTTCAACGCA 21840485 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA--CTTTGTATCAAACCACTTCATC 130204 || || || | || | |||||| ||| | || | ||| | ||| ||||| Sbjct 21840486 AGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG-----ATCCATTTCATA 21840540 Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-T 130263 ||||| | || |||||| | ||| || | ||| | ||| || |||||| | | | Sbjct 21840541 GCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGATGATCT 21840600 Query 130264 CT-TTTCTGATGGATCTTTGATGTA 130287 || | | || || ||||||||||| Sbjct 21840601 CTCTCTTTGTTG--TCTTTGATGTA 21840623 >seq5 Length=21221946 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983 ||||||||||||| | || |||||||| || || || || | |||||||||||||| Sbjct 15547860 GAATTACCGAGAAGCGTACGGTCTCTTCGCATGTAACGGAATCTTGTTCAACCACGAGTC 15547801 Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC 12022 ||| || ||||| | |||||||||| | ||||||||| Sbjct 15547800 ACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCAC 15547762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429819613760