Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 132 6e-26 seq8 125 8e-24 seq4 125 8e-24 seq7 98.7 1e-15 seq5 91.5 2e-13 >seq1 Length=33132539 Score = 132 bits (146), Expect = 6e-26 Identities = 327/492 (66%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 2326991 CGGTCAAACCGCCCTGGCCTTAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 2327050 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 2327051 GCCACTACGATAACACCAGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 2327110 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9700 | || ||||| | ||||||||| || |||| |||| | | |||| | || Sbjct 2327111 AGGGTCTGTTCTCTTTCATCATTACCT---CCACCAATTCCAGTTCCTCTTTGCCTACCA 2327167 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAG 9760 || ||||| || ||||| | ||| || |||||||| |||||| || || || Sbjct 2327168 ACAGCATCTATTTCATCCACGAAAACAATGCATGGAGCATTTTCTTTGGCTTTTTTGAAA 2327227 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || | ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 2327228 AGATCGCGGACTCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 2327286 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || | | |||||| ||| | |||||| ||||||||| || || || || || || Sbjct 2327287 GATGGAAAAGAAGGGCACACCGGCTTCACCAGCAATGGCTTTTGCCAGCAGGGTTTTCCC 2327346 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTA 9939 ||||| || ||| | ||||| ||||| || ||| ||| ||| | || | | Sbjct 2327347 AGTACCAGGAGGACCAACAAGGAGAACACCTTTGGGGATCCGGGCACCAACTGCAGTGAA 2327406 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAAT 9999 |||||||| | ||| ||||| ||||| | ||| || || | ||||| |||| | Sbjct 2327407 CCTCTCAGGCTTCTTCAGAAACTCCACCACTTCCATGAAATCCTGCTTGGCTTCGTCGAC 2327466 Query 10000 CCCCTCAACATC 10011 || ||||||| Sbjct 2327467 TCCAGCAACATC 2327478 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/282 (69%), Gaps = 10/282 (4%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| | || |||||||| ||||| | |||||||| || Sbjct 26184130 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCATCATTTCCT-- 26184187 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| ||||| | | ||| | ||||| || ||||||||||||||||| || || Sbjct 26184188 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 26184247 Query 9731 CATGGTTGATTTTCGC-GAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 9787 || || || ||| | ||| || || | ||||| || || || | || || ||| Sbjct 26184248 CAAGG-TGCTTTCGACTTAGCCTTCTCGAACAAATCCC-TA-ACTCTAGATGCACCAACA 26184304 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || ||||| | ||||||||| | | ||| | || || ||| || || | || Sbjct 26184305 CCCACAAAAAGCTCCACAAACTCCGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCCTCC 26184364 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 9889 || || | || | || || || |||||||||||||| ||| Sbjct 26184365 CCAGCCACCGCCCTAGCCAGGAGTGTCTTACCCGTACCAGGC 26184406 >seq8 Length=22951293 Score = 125 bits (138), Expect = 8e-24 Identities = 253/368 (69%), Gaps = 12/368 (3%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| | ||| ||||| | || ||| |||||| | ||| | ||| ||||| || Sbjct 6867504 TCAAATCTACCAGGACGCAACAGTGCGGAATCAAGAACATCCGGTCTATTGGTCGCAGCC 6867563 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| | ||| | | | | ||| ||||||||||| |||||||| || ||||| Sbjct 6867564 AACACAATGACACCGGAATTACCAGAAAACCCATCCATCTCAGTCAAAAGCTGATTAATC 6867623 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9704 || ||||| | ||||||||| | | ||| ||||| | | |||| | ||||| | Sbjct 6867624 GTCTGTTCTCTCTCATCATTCCC--ACCACCCATCCCAGCTCCTCTTTGCCTACCCACAG 6867681 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAGAG 9762 |||||||||||||||| || || || || || ||||| || || ||||| | Sbjct 6867682 CATCAATCTCATCAATAAACACAATACAAGG--AGCTTTCGACTTCGCCTTCTCAAACAA 6867739 Query 9763 ATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || | || |||||||||||||| | ||||||||| | | || | | Sbjct 6867740 ATCCC-TA-ACTCTAGAAGCACCCACACCAACAAAAAGCTCCACAAACTCCGAAGCAGCA 6867797 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || | ||| || || || ||| || || | |||| || | ||| ||||| ||| Sbjct 6867798 CACGAAAAGAACGGCACTCCAGCTTCTCCAGCCACAGCTCTAGCCAAAAGTGTCTTCCCC 6867857 Query 9881 GTACCTGG 9888 ||||| || Sbjct 6867858 GTACCCGG 6867865 >seq4 Length=23328337 Score = 125 bits (138), Expect = 8e-24 Identities = 285/422 (68%), Gaps = 10/422 (2%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || || | | ||| || || || | || | || ||| || | | ||||| Sbjct 14548835 ATCAAGAATGTCTGCTCTATTGGTTGCAGCAACTACGATAACACCAGTGTTACCTTCAAA 14548776 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 |||||||||||| || | || || || | || ||||| | ||||||||| || Sbjct 14548775 ACCATCCATCTCAGTTAGGAGCTGATTGAGGGTCTGTTCTCTTTCATCATTACCT---CC 14548719 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| || | | | |||| | || || ||||| || ||||| | |||||| ||||| Sbjct 14548718 ACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCTATTTCATCTACGAAGACAATGCA 14548659 Query 9733 TGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || || || || ||| ||| ||||| || || | ||| || ||||||| Sbjct 14548658 AGGAGCGTTCTCTTTGGCTTTCTTGAAA-AGATCACGGACTCTTGAGGCACCAACACCAA 14548600 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | || | || ||| || ||| || |||||| Sbjct 14548599 CAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGTACACCAGCTTCACCA 14548541 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||||||| || | ||| || || || ||||| || ||| ||||| ||||| Sbjct 14548540 GCAATGGCTTTTGCCAAAAGGGTTTTCCCGGTACCAGGAGGACCAATAAGGAGAACACCT 14548481 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970 ||| |||||||| ||| || | ||||||| |||| ||| ||||| ||||| | | Sbjct 14548480 TTTGGGATCTTGGCACCAACCGCAGTGAATCTCTCGGGTTTCTTCAGAAACTCCACCACT 14548421 Query 9971 TC 9972 || Sbjct 14548420 TC 14548419 >seq7 Length=24649197 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 94711 CAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATG 94770 || |||||| || ||| |||| |||| ||| | || ||||| || ||||||||| Sbjct 21840596 CATCTCTTTCGCGCAATCGAAACCATTCCTTGTGTGACGAAAAAAGCAGAATGGGCTATG 21840537 Query 94771 AAGTGGTTTGATACAAAG--TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTG 94828 || ||| | ||| | || | ||| |||||| || || | || ||||| || | Sbjct 21840536 AAATGGAT-----CAACGGATCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCG 21840482 Query 94829 TTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTC 94888 |||| ||||| |||||||||||| ||| || | || | ||| | ||||| |||||| Sbjct 21840481 TTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTT 21840422 Query 94889 TCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 | ||||| || ||| ||||| ||||| | || || | ||||| || || ||| Sbjct 21840421 TAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCAC 21840366 >seq5 Length=21221946 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 94825 TGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGA 94884 |||||||| |||||||||||||| || ||| || | || | ||||| ||||| ||| Sbjct 3397181 TGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTTTGTTCAATCTTCTGGCTAAAGAAACGA 3397122 Query 94885 GGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || |||||||| || || || |||||||| | ||||| |||||||| ||||| ||| Sbjct 3397121 GGACTCATGCCTGGACTAACATTTTCCAACGAATTGATCTCACGTGACGAAGGACTACAC 3397062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255725631040