Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 3e-14 >seq3 Length=24464547 Score = 93.3 bits (102), Expect = 3e-14 Identities = 130/181 (72%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 111730 TAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGT 111789 || ||||| ||||| || ||| |||||| || || | ||| | | | || | ||| Sbjct 23281363 TACACATGAGCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCACACACGTGA 23281422 Query 111790 GCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATA 111849 || | |||| | || || ||| ||| ||||||||||||||||||||| ||||||||| Sbjct 23281423 GCCAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAATGGCACACCAAGGCCCATA 23281482 Query 111850 TCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAA 111909 || | || | ||||| | |||||||| |||| || || |||||| || || ||| Sbjct 23281483 TCCGCTGAACGCTGATACATTTGACATGAGAGTTCCCCTTCTGCCACATAGAACTG-CAA 23281541 Query 111910 A 111910 | Sbjct 23281542 A 23281542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391942275321448