Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 2e-12 >seq7 Length=24649197 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 59929 aaaaaGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGCATCA----TTTGCACAACGT 59984 |||||||||||||||| ||| | ||||| | ||| | ||| || || | | Sbjct 21840556 AAAAAGCAGAATGGGCTATGAAATGGATCAAC---GGATC-TCAAAGCTTCGCTGAGAGA 21840501 Query 59985 CTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTC 60044 || |||||||||| ||||| ||||| || ||||||||||| || ||| | || ||| Sbjct 21840500 ATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATATTC 21840441 Query 60045 TGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGG 60104 ||| | || || || || | ||||| || || | ||||| ||||| ||||||| | Sbjct 21840440 TGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGA 21840381 Query 60105 GACGAGGGCCTCCA 60118 ||||| || || || Sbjct 21840380 GACGAAGGTCTTCA 21840367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520027834240