Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_028663.1
Length=188632
Score E
Sequences producing significant alignments: (Bits) Value
seq696 576 2e-159
seq74 219 5e-52
>seq696
Length=154923
Score = 576 bits (638), Expect = 2e-159
Identities = 700/954 (73%), Gaps = 0/954 (0%)
Strand=Plus/Minus
Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206
||||| |||| ||||||||||| | ||||| || | | || || | | ||
Sbjct 1336 TTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTT 1277
Query 176207 TTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAG 176266
|||| | ||||| ||||| || || || || ||||| || |||||||| ||||| ||
Sbjct 1276 TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTT 1217
Query 176267 CAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACG 176326
| |||||||| || || |||||||| || || || || || | | || | || |
Sbjct 1216 CTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAG 1157
Query 176327 CAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACA 176386
| || || | || || ||||| ||||||||||| ||| | ||||| |||||||| ||||
Sbjct 1156 CTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACA 1097
Query 176387 ATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGG 176446
| || || || || |||| |||| | ||||| | | ||| | | ||| ||||
Sbjct 1096 ACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGG 1037
Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506
| || | ||||||||||||| | | || || |||||||||||||| |||||||| |
Sbjct 1036 GTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCGGTTGCATATT 977
Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566
| || || || | || |||| || |||||| | |||||||| | ||||| ||| ||
Sbjct 976 CAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTT 917
Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626
| ||||||||||||||||| || || || ||||| |||||||||||| |||||||||| |
Sbjct 916 TTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGG 857
Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686
| |||||||||||||| ||||||||||| || ||| | || ||||| ||||| || || |
Sbjct 856 CTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 797
Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746
| || ||||| || ||||| || | || |||||| | | || || || |
Sbjct 796 GCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCA 737
Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806
| ||||| ||||| || | ||||||| |||||| ||||||||||| || |||||||
Sbjct 736 CAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACA 677
Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866
|||||||||| |||||||| ||||| || | |||||||| |||||| |||||| || |
Sbjct 676 TTGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATT 617
Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926
| | | | || |||||| | || || | || || || | || |||||||||||
Sbjct 616 CTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTT 557
Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986
| ||| || | || ||||| |||||||| || |||||||| |||||||| || || | |
Sbjct 556 TAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTG 497
Query 176987 ACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTA 177046
| | || || ||| ||| |||| ||||| |||||||||| ||||||||||
Sbjct 496 ATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTA 437
Query 177047 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100
||||||||||||| || |||||||||||||||||||| || ||||| |||||||
Sbjct 436 TGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 383
>seq74
Length=21493
Score = 219 bits (242), Expect = 5e-52
Identities = 259/352 (74%), Gaps = 9/352 (3%)
Strand=Plus/Minus
Query 176749 GAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATT 176808
||||| ||||| || | ||||||| |||||| ||||||||| | || |||||||||
Sbjct 11024 GAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAACTTACAACATT 10965
Query 176809 GTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCA 176868
|||||||| || ||||| ||||| || | ||||||| |||||| || ||
Sbjct 10964 GTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCG---------TTTCAACAATTCT 10914
Query 176869 AGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATG 176928
| | | || |||||| | || || | || || || | || ||||||||||| |
Sbjct 10913 CGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTA 10854
Query 176929 GGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGAC 176988
||| || |||| ||||| |||||||| || |||||||| |||||||| || || | ||
Sbjct 10853 GGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGAT 10794
Query 176989 AACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATG 177048
| || || ||| ||| |||| ||||| |||||||| | ||| ||||||||
Sbjct 10793 AGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTACTAACTTTGGTATG 10734
Query 177049 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100
||||||||||| || |||||||||||||||||||| || ||||| |||||||
Sbjct 10733 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 10682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603489149598720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |