Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq696 84.2 7e-12 seq2 84.2 7e-12 >seq696 Length=154923 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 21142 TTTCAAGTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGG 21201 ||||| ||| ||||||||| |||||||||| ||||||||||| |||||| | || Sbjct 36701 TTTCAGCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGG 36642 Query 21202 TTCGAATCCTGTCTCCGCAAC 21222 ||| ||||||||||||||||| Sbjct 36641 TTCAAATCCTGTCTCCGCAAC 36621 >seq2 Length=19320864 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 21142 TTTCAAGTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGG 21201 ||||| ||| ||||||||| |||||||||| ||||||||||| |||||| | || Sbjct 8799701 TTTCAGCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGG 8799760 Query 21202 TTCGAATCCTGTCTCCGCAAC 21222 ||| ||||||||||||||||| Sbjct 8799761 TTCAAATCCTGTCTCCGCAAC 8799781 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 21142 TTTCAAGTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGG 21201 ||||| ||| ||||||||| |||||||||| ||||||||||| |||||| | || Sbjct 9138780 TTTCAGCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGG 9138721 Query 21202 TTCGAATCCTGTCTCCGCAAC 21222 ||| ||||||||||||||||| Sbjct 9138720 TTCAAATCCTGTCTCCGCAAC 9138700 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 21142 TTTCAAGTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGG 21201 ||||| ||| ||||||||| |||||||||| ||||||||||| |||||| | || Sbjct 12222159 TTTCAGCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGG 12222100 Query 21202 TTCGAATCCTGTCTCCGCAAC 21222 ||| ||||||||||||||||| Sbjct 12222099 TTCAAATCCTGTCTCCGCAAC 12222079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162523456732528