Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
seq1 93.3 3e-14
seq4 86.0 4e-12
>seq6
Length=25113588
Score = 104 bits (114), Expect = 2e-17
Identities = 156/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||||||||| || ||||| || ||||| | || || || ||| |
Sbjct 10621862 ATGCAAATTTTTGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 10621921
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| || || ||| || ||||| ||||| |||| | || |
Sbjct 10621922 GACACCATTGACAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCTAGACC 10621979
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| | ||||| || ||||| ||||| | || || | || | ||| |||||||||
Sbjct 10621980 AGCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACTTTGGCCGATTACA 10622039
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
||||||| ||||| ||| | || |||||| | |||||
Sbjct 10622040 ACATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTT 10622079
Score = 86.0 bits (94), Expect = 4e-12
Identities = 152/220 (69%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||||||||| || ||||| || || || | || || || ||| |
Sbjct 906102 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 906043
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| || || ||||| || || ||| || ||||| ||||| |||| ||| |
Sbjct 906042 GACACCATCGACAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACC 905985
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| | ||||| || ||||| ||||| | || || | || | |||| |||||||||
Sbjct 905984 AGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGACCGATTACA 905925
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
| ||||| ||||| || | || |||||| | |||||
Sbjct 905924 ATATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTT 905885
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || |||||| | || ||| ||||| |||| || || ||||||||||| |||||
Sbjct 22886395 GATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAG 22886454
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | |||| | |||||||||||||| || ||| || | || ||||| |||
Sbjct 22886455 GATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 22886514
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 22886515 CGTCTCCGTGGAGG 22886528
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || |||||| | || ||| ||||| |||| || || ||||||||||| |||||
Sbjct 22900986 GATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAG 22901045
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | |||| | |||||||||||||| || ||| || | || ||||| |||
Sbjct 22901046 GATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 22901105
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 22901106 CGTCTCCGTGGAGG 22901119
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || |||||| | || ||| ||||| |||| || || ||||||||||| |||||
Sbjct 23069404 GATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAG 23069463
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | |||| | |||||||||||||| || ||| || | || ||||| |||
Sbjct 23069464 GATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 23069523
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 23069524 CGTCTCCGTGGAGG 23069537
>seq1
Length=33132539
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844
|||||||| || || |||||||| || || ||||| || || | || || ||| |
Sbjct 10396895 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCA 10396954
Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|| || || ||||| || ||| || || ||||||||||| | || ||
Sbjct 10396955 TCAGACACAATCGACAAT--GTGAAAGCGAAGATTCAAGACAAAGAAGGAATCCCACCGG 10397012
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| |||||||||||||| || ||||||||||||||||| || | | | | | | ||||
Sbjct 10397013 ATCAGCAACGGTTAATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTCGCTGATT 10397072
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || |||||| || | |||||||| | ||| || | || ||
Sbjct 10397073 ACAACATTCAGAAAGAGTCGACGCTTCATTTGGTGCTTCGTCTGAGAGGAGG 10397124
>seq4
Length=23328337
Score = 86.0 bits (94), Expect = 4e-12
Identities = 152/220 (69%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||||||||| || ||||| || || || | || || || ||| |
Sbjct 15772023 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 15771964
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| || || ||||| || || ||| || ||||| ||||| |||| ||| |
Sbjct 15771963 GACACCATCGACAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACC 15771906
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| | ||||| || ||||| ||||| | || || | || | |||| |||||||||
Sbjct 15771905 AGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGGCCGATTACA 15771846
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
| ||||| ||||| || | || |||||| | |||||
Sbjct 15771845 ATATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTT 15771806
Score = 82.4 bits (90), Expect = 5e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||| ||| |||| || || ||| || | |||||||| || || ||||||||
Sbjct 16908199 GACAAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 16908258
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | ||| |||||||||||||||| |||||| ||| | ||| |||| |||
Sbjct 16908259 GATGGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTG 16908318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355859381397192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |