Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq1 93.3 3e-14 seq4 86.0 4e-12 >seq6 Length=25113588 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| || ||||| || ||||| | || || || ||| | Sbjct 10621862 ATGCAAATTTTTGTGAAAACACTCACTGGCAAGACCATTACTCTCGAGGTTGAGAGCTCT 10621921 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || ||||| ||||| |||| | || | Sbjct 10621922 GACACCATTGACAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGGATTCCTCTAGACC 10621979 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | ||||| || ||||| ||||| | || || | || | ||| ||||||||| Sbjct 10621980 AGCAAAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACTTTGGCCGATTACA 10622039 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||| ||||| ||| | || |||||| | ||||| Sbjct 10622040 ACATCCAGAAAGAATCAACTCTCCACTTGGTTCTTCGTTT 10622079 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || ||||| || || || | || || || ||| | Sbjct 906102 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 906043 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| || ||||| ||||| |||| ||| | Sbjct 906042 GACACCATCGACAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACC 905985 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | ||||| || ||||| ||||| | || || | || | |||| ||||||||| Sbjct 905984 AGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGACCGATTACA 905925 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 | ||||| ||||| || | || |||||| | ||||| Sbjct 905924 ATATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTT 905885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || ||| ||||| |||| || || ||||||||||| ||||| Sbjct 22886395 GATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAG 22886454 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| | |||||||||||||| || ||| || | || ||||| ||| Sbjct 22886455 GATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 22886514 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 22886515 CGTCTCCGTGGAGG 22886528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || ||| ||||| |||| || || ||||||||||| ||||| Sbjct 22900986 GATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAG 22901045 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| | |||||||||||||| || ||| || | || ||||| ||| Sbjct 22901046 GATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 22901105 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 22901106 CGTCTCCGTGGAGG 22901119 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || ||| ||||| |||| || || ||||||||||| ||||| Sbjct 23069404 GATAAGGAAGGTATCCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGTTGGAG 23069463 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| | |||||||||||||| || ||| || | || ||||| ||| Sbjct 23069464 GATGGTCGTACCTTGGCGGATTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTG 23069523 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 23069524 CGTCTCCGTGGAGG 23069537 >seq1 Length=33132539 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 |||||||| || || |||||||| || || ||||| || || | || || ||| | Sbjct 10396895 AAAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCA 10396954 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || || || ||||| || ||| || || ||||||||||| | || || Sbjct 10396955 TCAGACACAATCGACAAT--GTGAAAGCGAAGATTCAAGACAAAGAAGGAATCCCACCGG 10397012 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||||||||| || ||||||||||||||||| || | | | | | | |||| Sbjct 10397013 ATCAGCAACGGTTAATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTCGCTGATT 10397072 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || |||||| || | |||||||| | ||| || | || || Sbjct 10397073 ACAACATTCAGAAAGAGTCGACGCTTCATTTGGTGCTTCGTCTGAGAGGAGG 10397124 >seq4 Length=23328337 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || ||||| || || || | || || || ||| | Sbjct 15772023 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCT 15771964 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| || ||||| ||||| |||| ||| | Sbjct 15771963 GACACCATCGACAAT--GTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGACC 15771906 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | ||||| || ||||| ||||| | || || | || | |||| ||||||||| Sbjct 15771905 AGCAGAGATTAATCTTCGCCGGTAAACAGCTAGAAGATGGTCGTACCTTGGCCGATTACA 15771846 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 | ||||| ||||| || | || |||||| | ||||| Sbjct 15771845 ATATCCAGAAAGAATCAACCCTCCACTTGGTTCTTCGTTT 15771806 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||| ||| |||| || || ||| || | |||||||| || || |||||||| Sbjct 16908199 GACAAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 16908258 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||| |||||||||||||||| |||||| ||| | ||| |||| ||| Sbjct 16908259 GATGGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTCTACTCTTCATCTGGTCTTG 16908318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355859381397192