Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq6 91.5 1e-13
seq5 82.4 7e-11
>seq6
Length=25113588
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| ||||| | || | ||||||||| || || ||||||||| || || || || ||
Sbjct 8749008 CCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCC 8749067
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176
||||| || | || || ||||| || || ||||| ||||| | ||||||||| ||||||
Sbjct 8749068 AGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 8749127
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233
| | |||||| ||| || || ||||| | | | || || |||| ||
Sbjct 8749128 -ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TC 8749183
Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || | ||||| |||| || || || || || ||||||||||||||
Sbjct 8749184 AACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| ||||| | || | ||||||||| || || |||||| || ||||| || || ||
Sbjct 10622316 CCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAGTCAGCG 10622257
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176
||||| || | || ||||||||||| || || || ||||| | ||||||||| ||||||
Sbjct 10622256 AGTGTACGACCATCTTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGTGGG 10622197
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236
| | |||||| ||| ||| || ||| | | | | || || ||| ||
Sbjct 10622196 -ATTCCCTCTTTATCCTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAAC 10622138
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | ||||| |||| || |||| || || |||||||| |||||
Sbjct 10622137 CTCGAGAGTGATTGTTTTACCAGTCAATGTCTTCACAAAGATCTGCAT 10622090
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|||||||||||||| || || ||| || || || || || || || | |||| ||
Sbjct 22900879 CGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCG 22900820
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| ||||| || || || || || || | | ||||||||| | || | | |||||||
Sbjct 22900819 TCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTG 22900760
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246
||| ||| || ||||| | | | || || ||| |||||| |||| |||
Sbjct 22900759 TCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCT---CTCCACCTCCAAAGTG 22900703
Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| | ||||| |||| ||| || || |||||||||||
Sbjct 22900702 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22900665
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
|| |||||||| || || || ||| || || || || || || || | |||| |
Sbjct 22758581 CGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCA 22758640
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189
|| ||||| ||||| || ||||| || | | ||||||||| | || | | |||||||
Sbjct 22758641 TCTTCAAGTTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCCTCTTTG 22758700
Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246
||| ||| || ||||| | | | || || |||| ||||| |||| |||
Sbjct 22758701 TCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCCACCTCCAAAGTG 22758757
Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| | ||||| |||| ||| || || |||||||||||
Sbjct 22758758 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22758795
>seq5
Length=21221946
Score = 82.4 bits (90), Expect = 7e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| ||| ||||| ||| || || || || || ||||| || || || |||| ||
Sbjct 20743181 ACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCC 20743122
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||||| || || || || | |||||||||| ||||||| | | || |||||
Sbjct 20743121 AGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCTTG 20743063
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| ||| ||| | | | | || ||| ||| || || || | || || | ||
Sbjct 20743062 GATCTTCGCTTTCACATTGTCGATGGTGTCGGACGATTCAACCTCTAGGGTTATGGTCTT 20743003
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288
||||| || ||||| || ||||| |||||||||
Sbjct 20743002 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 20742969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429541956379448
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