Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 seq5 82.4 7e-11 >seq6 Length=25113588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || || ||||||||| || || || || || Sbjct 8749008 CCACCTCTAAGACGAAGCACCAAATGGAGGGTTGACTCTTTTTGGATGTTGTAGTCAGCC 8749067 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 ||||| || | || || ||||| || || ||||| ||||| | ||||||||| |||||| Sbjct 8749068 AGTGTGCGACCATCCTCTAGCTGCTTACCTGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 8749127 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | | |||||| ||| || || ||||| | | | || || |||| || Sbjct 8749128 -ATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTC---TC 8749183 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| || || || || || |||||||||||||| Sbjct 8749184 AACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATTTGCAT 8749234 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||||||| || || |||||| || ||||| || || || Sbjct 10622316 CCACCTCTGAGACGAAGCACCAAATGGAGGGTAGACTCTTTCTGGATATTGTAGTCAGCG 10622257 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 ||||| || | || ||||||||||| || || || ||||| | ||||||||| |||||| Sbjct 10622256 AGTGTACGACCATCTTCAAGCTGTTTCCCAGCGAAGATAAGTCTCTGCTGGTCTGGTGGG 10622197 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | |||||| ||| ||| || ||| | | | | || || ||| || Sbjct 10622196 -ATTCCCTCTTTATCCTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAAC 10622138 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| || |||| || || |||||||| ||||| Sbjct 10622137 CTCGAGAGTGATTGTTTTACCAGTCAATGTCTTCACAAAGATCTGCAT 10622090 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||||||||||||| || || ||| || || || || || || || | |||| || Sbjct 22900879 CGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCG 22900820 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||| || || || || || || | | ||||||||| | || | | ||||||| Sbjct 22900819 TCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGAATACCCTCTTTG 22900760 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246 ||| ||| || ||||| | | | || || ||| |||||| |||| ||| Sbjct 22900759 TCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCT---CTCCACCTCCAAAGTG 22900703 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||| |||| ||| || || ||||||||||| Sbjct 22900702 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22900665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || ||| || || || || || || || | |||| | Sbjct 22758581 CGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTGCCA 22758640 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || ||||| ||||| || ||||| || | | ||||||||| | || | | ||||||| Sbjct 22758641 TCTTCAAGTTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGGATACCCTCTTTG 22758700 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTG 39246 ||| ||| || ||||| | | | || || |||| ||||| |||| ||| Sbjct 22758701 TCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCTC---TCCACCTCCAAAGTG 22758757 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||| |||| ||| || || ||||||||||| Sbjct 22758758 ATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22758795 >seq5 Length=21221946 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| ||||| ||| || || || || || ||||| || || || |||| || Sbjct 20743181 ACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCTTCC 20743122 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || || || || | |||||||||| ||||||| | | || ||||| Sbjct 20743121 AGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG-ATTCCTTCCTTGTCTTG 20743063 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| ||| | | | | || ||| ||| || || || | || || | || Sbjct 20743062 GATCTTCGCTTTCACATTGTCGATGGTGTCGGACGATTCAACCTCTAGGGTTATGGTCTT 20743003 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||||| || ||||| || ||||| ||||||||| Sbjct 20743002 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT 20742969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429541956379448