Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 seq7 89.7 4e-13 >seq6 Length=25113588 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | |||||||||||| || || ||||||||||||| ||| | |||||| Sbjct 10622070 ACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCCAAAGTACGGCCATCTTCT 10622011 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | ||||| || || | || | ||||| ||||||| || | ||||| ||||| | Sbjct 10622010 AGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCTAGAGGAATCCCTTCCTTGTCCTGA 10621951 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 || ||| || |||| | | | || || | | | |||| ||||| || ||| Sbjct 10621950 ATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTTG 10621891 Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || | |||||| | |||||||||||| Sbjct 10621890 CCAGTGAGTGTTTTCACAAAAATTTGCAT 10621862 >seq7 Length=24649197 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||| || | ||| ||| | | |||| || ||||||||||||||||| ||| Sbjct 18994812 CCACCTCTCAACCTAAGGGCCAAGTGGAGAATTGACTCCTTTTGAATATTGTAATCAGCC 18994871 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | ||| || | |||||| || ||| | ||||||| ||| ||||||| || Sbjct 18994872 AAAGTACGGCCATCCTCGAGTTGTTTACCGGCAAAGATAAGCCGTTGCTGGTCTAGAGGA 18994931 Query 101132 ACGCCTTCTTTGTC 101145 | ||||||||||| Sbjct 18994932 ATCCCTTCTTTGTC 18994945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409657325052264