Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_030240.1
Length=128058
Score E
Sequences producing significant alignments: (Bits) Value
seq6 93.3 3e-14
seq7 89.7 4e-13
>seq6
Length=25113588
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089
|||| ||| | |||||||||||| || || ||||||||||||| ||| | ||||||
Sbjct 10622070 ACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCGGCCAAAGTACGGCCATCTTCT 10622011
Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149
| ||||| || || | || | ||||| ||||||| || | ||||| ||||| |
Sbjct 10622010 AGCTGTTTACCGGCGAAGATTAATCTTTGCTGGTCTAGAGGAATCCCTTCCTTGTCCTGA 10621951
Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209
|| ||| || |||| | | | || || | | | |||| ||||| || |||
Sbjct 10621950 ATCTTTGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTAATGGTCTTG 10621891
Query 101210 CCCGTCAATGTTTTAATAAAAATTTGCAT 101238
|| || | |||||| | ||||||||||||
Sbjct 10621890 CCAGTGAGTGTTTTCACAAAAATTTGCAT 10621862
>seq7
Length=24649197
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071
|| |||| ||| || | ||| ||| | | |||| || ||||||||||||||||| |||
Sbjct 18994812 CCACCTCTCAACCTAAGGGCCAAGTGGAGAATTGACTCCTTTTGAATATTGTAATCAGCC 18994871
Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131
| ||| | ||| || | |||||| || ||| | ||||||| ||| ||||||| ||
Sbjct 18994872 AAAGTACGGCCATCCTCGAGTTGTTTACCGGCAAAGATAAGCCGTTGCTGGTCTAGAGGA 18994931
Query 101132 ACGCCTTCTTTGTC 101145
| |||||||||||
Sbjct 18994932 ATCCCTTCTTTGTC 18994945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409657325052264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |