Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq7 172 5e-38
>seq7
Length=24649197
Score = 172 bits (190), Expect = 5e-38
Identities = 379/558 (68%), Gaps = 20/558 (4%)
Strand=Plus/Plus
Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604
||||| || |||||||| || | |||||||||||| ||||| ||||||||| || ||
Sbjct 21840349 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 21840408
Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664
| ||| ||||||||||||| || || | ||| ||||| | ||| ||||| |||
Sbjct 21840409 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAG 21840468
Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--- 4721
||||| ||||| ||| ||||| ||||| | || | | ||| ||||||
Sbjct 21840469 AATATACCTTCAACGCAAGCAAAAGCTACGATTC----TCTCAGCGA---AGCTTTGAGA 21840521
Query 4722 -TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780
| || |||||||| | ||||| | ||||||||| | || || ||||| || | ||
Sbjct 21840522 TCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGAT 21840581
Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840
||| ||| | | | | | || ||||| || |||||||| | || || ||
Sbjct 21840582 TGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACT 21840641
Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900
|||||| |||||||| ||||| || || || || || |||||||| ||| | ||||||
Sbjct 21840642 ATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTC 21840701
Query 4901 TGTTACTTGAACTTCGTTACA-AAATC-TTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958
|| | ||||| ||| ||| |||| || | | || || || || |||||
Sbjct 21840702 TGAGATCTGAACATCG-GACATGAATCGGGTCGA-GAGATTCTCCAGAACGATTCCGTCT 21840759
Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC--AGGCT--TAAG 5014
|| ||||| || || | || || || |||| ||||||| || | | ||
Sbjct 21840760 GATGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAG 21840819
Query 5015 TTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074
|||| ||||| | | |||| || | ||| |||||||| | ||||| || |||||
Sbjct 21840820 -TTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGC 21840878
Query 5075 TTCCGCTTTTTTGTACAT 5092
||| ||||| ||||||||
Sbjct 21840879 TTCGGCTTTCTTGTACAT 21840896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427045977551768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |