Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7 172 5e-38 >seq7 Length=24649197 Score = 172 bits (190), Expect = 5e-38 Identities = 379/558 (68%), Gaps = 20/558 (4%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| || |||||||| || | |||||||||||| ||||| ||||||||| || || Sbjct 21840349 AAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTG 21840408 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | ||| ||||||||||||| || || | ||| ||||| | ||| ||||| ||| Sbjct 21840409 AGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCAGAGAAG 21840468 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--- 4721 ||||| ||||| ||| ||||| ||||| | || | | ||| |||||| Sbjct 21840469 AATATACCTTCAACGCAAGCAAAAGCTACGATTC----TCTCAGCGA---AGCTTTGAGA 21840521 Query 4722 -TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATAT 4780 | || |||||||| | ||||| | ||||||||| | || || ||||| || | || Sbjct 21840522 TCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGAT 21840581 Query 4781 AGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCT 4840 ||| ||| | | | | | || ||||| || |||||||| | || || || Sbjct 21840582 TGCGCGAAAGAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACT 21840641 Query 4841 ATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTC 4900 |||||| |||||||| ||||| || || || || || |||||||| ||| | |||||| Sbjct 21840642 ATACATCTCAGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTC 21840701 Query 4901 TGTTACTTGAACTTCGTTACA-AAATC-TTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 || | ||||| ||| ||| |||| || | | || || || || ||||| Sbjct 21840702 TGAGATCTGAACATCG-GACATGAATCGGGTCGA-GAGATTCTCCAGAACGATTCCGTCT 21840759 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTC--AGGCT--TAAG 5014 || ||||| || || | || || || |||| ||||||| || | | || Sbjct 21840760 GATGCGGCAAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAG 21840819 Query 5015 TTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGC 5074 |||| ||||| | | |||| || | ||| |||||||| | ||||| || ||||| Sbjct 21840820 -TTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGC 21840878 Query 5075 TTCCGCTTTTTTGTACAT 5092 ||| ||||| |||||||| Sbjct 21840879 TTCGGCTTTCTTGTACAT 21840896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045977551768