Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq7 260 2e-64
seq5 178 2e-39
seq4 102 1e-16
>seq7
Length=24649197
Score = 260 bits (288), Expect = 2e-64
Identities = 620/921 (67%), Gaps = 31/921 (3%)
Strand=Plus/Plus
Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908
||| ||||| ||||| || | ||||| ||||| |||||||| |||| | || ||
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968
|||||| ||||||| |||||| || ||| | || | | || | | | |
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179
Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028
| ||||| ||||| || || || || |||||| |||| |||||| || | |
Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239
Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088
| || || || || || ||||||| || || || ||||| | |||
Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299
Query 48089 CGATGTTAC-CGTT--TCCTCA--CTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143
|||| | | |||| || ||| ||| || | || || | || | || |||||
Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCTTAGT---TCTAAGAA--GACTATAGATCAAACAA 21840354
Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203
|| |||||||| ||||||||||| ||||| ||| ||||||||||| |||||||| ||
Sbjct 21840355 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 21840414
Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATAT 48262
||||||| || ||||| || | ||| ||||| | | |||| | ||||| ||||||||
Sbjct 21840415 GGCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATAT 21840473
Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT---GGCTTCGTTGTGTAT 48319
||||| ||| ||||| || | |||||| || | || | | ||||| ||
Sbjct 21840474 ACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG---AT 21840530
Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379
||| ||||| || || || ||| | |||||||| || ||||| || || |||
Sbjct 21840531 CCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAA 21840590
Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439
|||| | | | || ||| | ||||| | |||||| || | | ||||||||||| ||
Sbjct 21840591 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 21840650
Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499
|| |||||||| || || || || || |||||||| || | ||||||| ||||||
Sbjct 21840651 AGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTG 21840710
Query 48500 TACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAA 48558
|| | || ||| ||||| | | |||||| || ||||| || || ||||
Sbjct 21840711 AACAT-CGGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAA 21840769
Query 48559 AAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGGA-AGTCAGTTTATTCCAG 48614
| || || | || ||||| || || | || |||||||| ||| ||||| | ||||
Sbjct 21840770 AGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAG 21840828
Query 48615 TC---ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671
|| |||| |||| || | ||| |||||||| || ||||| || || || || |||
Sbjct 21840829 TCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCT 21840885
Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGA 48731
|| || ||||| | ||| || | ||||||||||||||| ||| |||| || |||
Sbjct 21840886 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGT 21840945
Query 48732 TTTTTTGCAAGGATAGGTTCC 48752
|| || ||||| ||||||
Sbjct 21840946 GTTGGTGTTAGGATTGGTTCC 21840966
Score = 91.5 bits (100), Expect = 2e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201
|| ||||||||| ||||||| || |||||| ||||| | | |||||||||| || | |
Sbjct 508368 AAAACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 508309
Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCAT 77259
|| || || |||||||| ||||| ||||||||||| | | |||||||| ||||
Sbjct 508308 ATCTGGCTGGTTGAAGCAGTAGGCATTGGTGCCACCAAAAGAGAATTTCTGATTCCAT 508251
>seq5
Length=21221946
Score = 178 bits (196), Expect = 2e-39
Identities = 288/408 (71%), Gaps = 11/408 (3%)
Strand=Plus/Plus
Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389
||||| | ||| |||||| || ||||| || ||||| || ||| ||||||| | |
Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489
Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449
| || ||| ||||||| | |||||||| | | ||||||||||| || ||||| |||
Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549
Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509
|||||||| || ||||| || ||||| ||| | ||| || | || || || | || |
Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACAT-CGGA 3397608
Query 48510 CA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568
|| ||||| ||| | |||||| ||| ||||| ||| || || || || || |
Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668
Query 48569 TACATGTTTAATAAAAT-ATTTT-----TCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622
|||||||| || || | | || |||||| || |||| | |||||| | |
Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTG--AGATTGTTT-TCCCAGTCGCGGTT 3397725
Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682
|| | ||||| ||||||||||||||| ||||| || ||||| || |||||||| |||||
Sbjct 3397726 GTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACAT 3397785
Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730
| ||| || | ||| || |||||||| ||| ||||| | |||
Sbjct 3397786 TTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833
>seq4
Length=23328337
Score = 102 bits (112), Expect = 1e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| || || | ||| | || || | ||| | || | || ||| |||| ||||||
Sbjct 502016 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACCA 501957
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
||||||||||||||||| ||| ||| || |||||| |||| || |||||| || ||
Sbjct 501956 TTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGAA 501897
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || || ||||| || || ||| | ||| || ||| | ||| ||||| ||
Sbjct 501896 ACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAATG 501837
Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379
||||| || || ||||| ||||| | ||||| |||||
Sbjct 501836 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694662756381440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |