Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7 260 2e-64 seq5 178 2e-39 seq4 102 1e-16 >seq7 Length=24649197 Score = 260 bits (288), Expect = 2e-64 Identities = 620/921 (67%), Gaps = 31/921 (3%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| ||||| || | ||||| ||||| |||||||| |||| | || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 |||||| ||||||| |||||| || ||| | || | | || | | | | Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 | ||||| ||||| || || || || |||||| |||| |||||| || | | Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT 48088 | || || || || || ||||||| || || || ||||| | ||| Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299 Query 48089 CGATGTTAC-CGTT--TCCTCA--CTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143 |||| | | |||| || ||| ||| || | || || | || | || ||||| Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCTTAGT---TCTAAGAA--GACTATAGATCAAACAA 21840354 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 || |||||||| ||||||||||| ||||| ||| ||||||||||| |||||||| || Sbjct 21840355 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCA 21840414 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATAT 48262 ||||||| || ||||| || | ||| ||||| | | |||| | ||||| |||||||| Sbjct 21840415 GGCATTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATAT 21840473 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACT---GGCTTCGTTGTGTAT 48319 ||||| ||| ||||| || | |||||| || | || | | ||||| || Sbjct 21840474 ACCTTCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTTG---AT 21840530 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| ||||| || || || ||| | |||||||| || ||||| || || ||| Sbjct 21840531 CCATTTCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAA 21840590 Query 48380 GAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTC 48439 |||| | | | || ||| | ||||| | |||||| || | | ||||||||||| || Sbjct 21840591 GAGATGATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTC 21840650 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 || |||||||| || || || || || |||||||| || | ||||||| |||||| Sbjct 21840651 AGAATGAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTG 21840710 Query 48500 TACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAA 48558 || | || ||| ||||| | | |||||| || ||||| || || |||| Sbjct 21840711 AACAT-CGGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAA 21840769 Query 48559 AAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGGA-AGTCAGTTTATTCCAG 48614 | || || | || ||||| || || | || |||||||| ||| ||||| | |||| Sbjct 21840770 AGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAG 21840828 Query 48615 TC---ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 || |||| |||| || | ||| |||||||| || ||||| || || || || ||| Sbjct 21840829 TCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCT 21840885 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGA 48731 || || ||||| | ||| || | ||||||||||||||| ||| |||| || ||| Sbjct 21840886 TTCTTGTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGT 21840945 Query 48732 TTTTTTGCAAGGATAGGTTCC 48752 || || ||||| |||||| Sbjct 21840946 GTTGGTGTTAGGATTGGTTCC 21840966 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201 || ||||||||| ||||||| || |||||| ||||| | | |||||||||| || | | Sbjct 508368 AAAACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 508309 Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCAT 77259 || || || |||||||| ||||| ||||||||||| | | |||||||| |||| Sbjct 508308 ATCTGGCTGGTTGAAGCAGTAGGCATTGGTGCCACCAAAAGAGAATTTCTGATTCCAT 508251 >seq5 Length=21221946 Score = 178 bits (196), Expect = 2e-39 Identities = 288/408 (71%), Gaps = 11/408 (3%) Strand=Plus/Plus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| | ||| |||||| || ||||| || ||||| || ||| ||||||| | | Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 | || ||| ||||||| | |||||||| | | ||||||||||| || ||||| ||| Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 |||||||| || ||||| || ||||| ||| | ||| || | || || || | || | Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACAT-CGGA 3397608 Query 48510 CA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAA 48568 || ||||| ||| | |||||| ||| ||||| ||| || || || || || | Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668 Query 48569 TACATGTTTAATAAAAT-ATTTT-----TCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 |||||||| || || | | || |||||| || |||| | |||||| | | Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTG--AGATTGTTT-TCCCAGTCGCGGTT 3397725 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || | ||||| ||||||||||||||| ||||| || ||||| || |||||||| ||||| Sbjct 3397726 GTCCTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACAT 3397785 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730 | ||| || | ||| || |||||||| ||| ||||| | ||| Sbjct 3397786 TTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833 >seq4 Length=23328337 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| | || | || ||| |||| |||||| Sbjct 502016 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATAGGAACAATACCA 501957 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| || |||||| |||| || |||||| || || Sbjct 501956 TTAGATGTTCCATTTGTGCCACGAATGTAGCTTCCAGTTGCACGGATATTATGAACCGAA 501897 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || ||| | ||| || ||| | ||| ||||| || Sbjct 501896 ACACCGATACCTCCGGCAGATTTGCTTATAACAGCACATTCTTTGAGTGTTTCGTAAATG 501837 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || ||||| ||||| | ||||| ||||| Sbjct 501836 CCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCT 501796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662756381440