Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq7 237 2e-57
seq5 131 2e-25
seq4 91.5 2e-13
seq2 86.0 9e-12
>seq7
Length=24649197
Score = 237 bits (262), Expect = 2e-57
Identities = 611/916 (67%), Gaps = 21/916 (2%)
Strand=Plus/Plus
Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397
||| || || ||||| || | ||||| ||||| |||||||| |||| | || ||
Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119
Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457
|||||| ||||||| |||||| | ||| ||| | || | | || | | | |
Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179
Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517
| ||||| ||||| || || || ||| |||||| |||| |||||| || | |
Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239
Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577
|| || || || || ||||||| ||||| || ||||| | | |||
Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299
Query 46578 CGATGTTACTGTTTCCTCA-CTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636
|||| | | ||| ||| | | | | | | | | | || | || ||||| || |
Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCTTAGTTC-TAAGAAGACTATAGATCAAACAAGCGA 21840358
Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696
||||||| ||||| ||||| ||||| ||| ||||||||||| |||||||| |||||||
Sbjct 21840359 AATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCA 21840418
Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCT 46755
||| || || || || | ||| ||||| | | |||| | ||||| |||||||| |||
Sbjct 21840419 TTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATACCT 21840477
Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC--TGGCATCATTATGAATCCACC 46813
|| || || || || || | |||||| || | | || ||| | || |||||
Sbjct 21840478 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGT-TG-ATCCATT 21840535
Query 46814 TTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873
| |||||| || || |||||| | |||||||| || ||||| || || |||||||
Sbjct 21840536 TCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGAT 21840595
Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933
| | | || | | ||||| | || || || | | ||||||||||| || ||||
Sbjct 21840596 GATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGAAT 21840655
Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993
|||| || || || || || || |||||||| || | ||||| | ||||| || |
Sbjct 21840656 GAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAACAT 21840715
Query 46994 CTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052
| | ||| ||||| || | |||||| || ||||| || || ||||| ||
Sbjct 21840716 C-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGAAG 21840774
Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATC----GGTAGTCAGTTTATTCCAGTC--- 47105
|| | || ||||| || || | ||| || | |||| ||||| | ||||||
Sbjct 21840775 GCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCGCG 21840833
Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165
|||| |||| || | ||| |||||||| || |||||||| ||||| || ||||| ||
Sbjct 21840834 ATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTT 21840890
Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTT 47225
||||| | ||| || | | |||||||| || || ||| |||| || ||| ||
Sbjct 21840891 GTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTTGG 21840950
Query 47226 TGCAAGTATAGGTTCC 47241
|| || || ||||||
Sbjct 21840951 TGTTAGGATTGGTTCC 21840966
Score = 123 bits (136), Expect = 4e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
||||| || || | ||| | ||||| | ||| | || | || |||||||| ||||||
Sbjct 506603 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATGCCA 506544
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
||||||| ||||| || ||| ||| ||||||||| |||||| || || ||| ||
Sbjct 506543 TTAGATGCTCCATTGGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGAA 506484
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || || || || ||| ||| || | |||||| ||||||||||||||| ||
Sbjct 506483 ACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATATC 506424
Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974
||||| || ||||||||| ||||| | ||||| |||||
Sbjct 506423 CCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 506383
Score = 95.1 bits (104), Expect = 2e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796
|| ||||| ||| ||||||| || |||||| ||||| | | |||||||||| || | |
Sbjct 508368 AAAACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 508309
Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856
|| || ||||||||||| ||||| ||||||||||| | | |||||||| ||||
Sbjct 508308 ATCTGGCTGGTTGAAGCAGTAGGCATTGGTGCCACCAAAAGAGAATTTCTGATTCCATTC 508249
Query 75857 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAG 75916
|| || |||| | ||| ||| ||||| | || ||||| | || | |||
Sbjct 508248 TTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGGTCAGATGGAATTACGTTCCAC 508189
Query 75917 AGATCGTATTGTAGAATTCC 75936
| ||| ||| ||||||||
Sbjct 508188 ATATCAGGTTGAAGAATTCC 508169
>seq5
Length=21221946
Score = 131 bits (144), Expect = 2e-25
Identities = 275/405 (68%), Gaps = 5/405 (1%)
Strand=Plus/Plus
Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878
||||| | ||| || ||| || ||||| || ||||| || ||| ||||||| | |
Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489
Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938
| || | ||||||| | ||| ||||| | | ||||||||||| || || || ||
Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549
Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998
|||||||| || ||||| || ||||| ||| | || || | | || || || | |
Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608
Query 46999 CA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAA 47057
|| ||||| || | |||||| || ||||| ||| || || || || || |
Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668
Query 47058 TACATGTTTAATAAAATATTTTTCATCG--GTAGTCAGT-TTATTCCAGTCATTGATATC 47114
|||||||| || || | |||| || || | | | || | |||||| | | ||
Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGTCGCGGTTGTC 3397728
Query 47115 TTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT 47174
| ||||| ||||||||||||||| |||||||| || || || |||||||| ||||| |
Sbjct 3397729 CTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTTC 3397788
Query 47175 CCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219
||| || | | || || || || || ||| ||||| | |||
Sbjct 3397789 CCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833
Score = 100 bits (110), Expect = 4e-16
Identities = 281/427 (66%), Gaps = 6/427 (1%)
Strand=Plus/Plus
Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397
||| || || ||||| ||||||||||| |||||||||||||| |||| | || |||
Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815
Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457
|||||| ||||||||||||| |||||| || | || | || | | |
Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875
Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517
|| ||||| ||||| || || |||||| |||||| |||| ||||| || | |
Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935
Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577
| ||| || || || | ||||||| || || ||| || || | | ||
Sbjct 3396936 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGAT 3396995
Query 46578 CGATGTTACTGTTTCCTCACTTGG--TGGATGCATCAAATGTTTAAACATTAAACATGCA 46635
|| | || ||| ||||| | | | | || ||| || | | | || ||
Sbjct 3396996 TGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGCG 3397053
Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695
||||| || || || ||||| || | || |||||||| |||||||| || ||||||
Sbjct 3397054 AAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGGC 3397113
Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG-ATCCAGAAAAGAATATGCC 46754
|| ||||| || || || ||||| || || | | |||| ||| || ||||| || ||
Sbjct 3397114 ATGAGTCCTCGTTTCTTTAGCCAGAAGATTG-AACAAAAGCTTCCGGAGAAGAAGATACC 3397172
Query 46755 TTCTACA 46761
||| |||
Sbjct 3397173 TTCAACA 3397179
>seq4
Length=23328337
Score = 91.5 bits (100), Expect = 2e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
||||||||| || || | |||||||||||||||||||||||| | | ||| | | ||
Sbjct 501677 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 501618
Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111
||| |||| || | | || ||||| | ||| || || || ||||| || | |||||
Sbjct 501617 GTAAGTTTGGATTGCGGAATCAATATCGTCCTTG-TGGATACCAACAGCAACCCTCATCA 501559
Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171
||| || ||||| | ||| ||| | | | |||||| | ||| ||| | || |
Sbjct 501558 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 501499
Query 77172 AAGTTTTAAAACCAAAATA 77190
||||||||| ||||| ||
Sbjct 501498 GAGTTTTAAATCCAAAGTA 501480
>seq2
Length=19320864
Score = 86.0 bits (94), Expect = 9e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551
|||||||||||| | ||| || | | |||||||| ||||| ||| |||||||
Sbjct 4060746 CTCTCTTTCATACTTTGTGTACAGTCTCTCAAATTCTGTGCCCCAGCAATCTGCCAAACC 4060687
Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611
||| |||||| ||||| | ||||||||||| ||||| | || || | | ||| ||
Sbjct 4060686 TGGAGCTTCATTAGGACAAAACAATGACCACTTCCCATCATGTTTGACTCTCTCCATGAA 4060627
Query 76612 GAGATCAGGTATCCATAGAGCAATA 76636
||||| || ||||| ||||| |||
Sbjct 4060626 AAGATCTGGAATCCAGAGAGCTATA 4060602
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712928197470720
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