Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7 237 2e-57 seq5 131 2e-25 seq4 91.5 2e-13 seq2 86.0 9e-12 >seq7 Length=24649197 Score = 237 bits (262), Expect = 2e-57 Identities = 611/916 (67%), Gaps = 21/916 (2%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || ||||| || | ||||| ||||| |||||||| |||| | || || Sbjct 21840060 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTAGTTTTACCTTGAAGCGAAATCAA 21840119 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||| ||||||| |||||| | ||| ||| | || | | || | | | | Sbjct 21840120 TTCCATCCAATCAAAAGGATTACTCACACCATACACCTTACCACACCCAAGCGCAGTCAA 21840179 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 | ||||| ||||| || || || ||| |||||| |||| |||||| || | | Sbjct 21840180 TAACCTATCAGCAACAAACTCAATGTACTGACTCATCAACTCACGATTCATACCAACCAA 21840239 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || || || || || ||||||| ||||| || ||||| | | ||| Sbjct 21840240 GGCACAAGGAAGCGCATCGCAAACAAACTCTCTCTCAATCTCAACCGCATCACAAACTAT 21840299 Query 46578 CGATGTTACTGTTTCCTCA-CTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636 |||| | | ||| ||| | | | | | | | | | || | || ||||| || | Sbjct 21840300 CGATTTCAAACGTTCTTCATCAAGCTTAGTTC-TAAGAAGACTATAGATCAAACAAGCGA 21840358 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||||| ||||| ||||| ||||| ||| ||||||||||| |||||||| ||||||| Sbjct 21840359 AATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTAGAGAATGTGAGTCCAGGCA 21840418 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCT 46755 ||| || || || || | ||| ||||| | | |||| | ||||| |||||||| ||| Sbjct 21840419 TTAAACCTCGTTTCTTCAACCAGAATATCG-AACAAAAGCTACCAGAGAAGAATATACCT 21840477 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAAC--TGGCATCATTATGAATCCACC 46813 || || || || || || | |||||| || | | || ||| | || ||||| Sbjct 21840478 TCAACGCAAGCAAAAGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGT-TG-ATCCATT 21840535 Query 46814 TTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 | |||||| || || |||||| | |||||||| || ||||| || || ||||||| Sbjct 21840536 TCATAGCCCATTCTGCTTTTTTCGTCACACAAGGAATGGTTTCGATTGCGCGAAAGAGAT 21840595 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 | | | || | | ||||| | || || || | | ||||||||||| || |||| Sbjct 21840596 GATCTCTCTCTTTGTTGTCTTTGATGTAAGTGTCGAGAAGGAGACTATACATCTCAGAAT 21840655 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 |||| || || || || || || |||||||| || | ||||| | ||||| || | Sbjct 21840656 GAATATTCTCGATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATCTGAACAT 21840715 Query 46994 CTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 | | ||| ||||| || | |||||| || ||||| || || ||||| || Sbjct 21840716 C-GGACATGAATCGGGTCGAGAGATTCTCCAGAACGATTCCGTCTGATGCGGCAAAGAAG 21840774 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATC----GGTAGTCAGTTTATTCCAGTC--- 47105 || | || ||||| || || | ||| || | |||| ||||| | |||||| Sbjct 21840775 GCGAGGACGTGTTTGATGAAGTGACGTTCGTCGTTGGATAGTGAGTTT-TCCCAGTCGCG 21840833 Query 47106 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 |||| |||| || | ||| |||||||| || |||||||| ||||| || ||||| || Sbjct 21840834 ATTG---TCTTGAGAGAGATCGACTTCTTCGGCGGTCCAGAAGGACGCTTCGGCTTTCTT 21840890 Query 47166 ATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTT 47225 ||||| | ||| || | | |||||||| || || ||| |||| || ||| || Sbjct 21840891 GTACATCTCCCAGATCTGTGGGTATTGGATTGGGAACATACAGAATCGATCTGGTGTTGG 21840950 Query 47226 TGCAAGTATAGGTTCC 47241 || || || |||||| Sbjct 21840951 TGTTAGGATTGGTTCC 21840966 Score = 123 bits (136), Expect = 4e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | ||||| | ||| | || | || |||||||| |||||| Sbjct 506603 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACAATGCCA 506544 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||| ||||| || ||| ||| ||||||||| |||||| || || ||| || Sbjct 506543 TTAGATGCTCCATTGGTACCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAATTGAA 506484 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || ||| ||| || | |||||| ||||||||||||||| || Sbjct 506483 ACACCAATGCCCCCAGCCGATTTGCTTATAACAGCACACTCTTTCAATGTGTCATATATC 506424 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || ||||||||| ||||| | ||||| ||||| Sbjct 506423 CCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCT 506383 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796 || ||||| ||| ||||||| || |||||| ||||| | | |||||||||| || | | Sbjct 508368 AAAACTCTACGACTGTAAATGTTTGAGGTATAAGGTTCAAAACATTCATTGTTCCCAAGA 508309 Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856 || || ||||||||||| ||||| ||||||||||| | | |||||||| |||| Sbjct 508308 ATCTGGCTGGTTGAAGCAGTAGGCATTGGTGCCACCAAAAGAGAATTTCTGATTCCATTC 508249 Query 75857 GTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAG 75916 || || |||| | ||| ||| ||||| | || ||||| | || | ||| Sbjct 508248 TTTGAAATCATATCCCTGAGAGCAGCCCAGTCCCAGCGGTCAGATGGAATTACGTTCCAC 508189 Query 75917 AGATCGTATTGTAGAATTCC 75936 | ||| ||| |||||||| Sbjct 508188 ATATCAGGTTGAAGAATTCC 508169 >seq5 Length=21221946 Score = 131 bits (144), Expect = 2e-25 Identities = 275/405 (68%), Gaps = 5/405 (1%) Strand=Plus/Plus Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 ||||| | ||| || ||| || ||||| || ||||| || ||| ||||||| | | Sbjct 3397430 GCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTTTCAATGGCACGAAAGAGATGATCT 3397489 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 | || | ||||||| | ||| ||||| | | ||||||||||| || || || || Sbjct 3397490 CTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATCTCCGAGTGGATA 3397549 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 |||||||| || ||||| || ||||| ||| | || || | | || || || | | Sbjct 3397550 TTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTTGAACATC-GGA 3397608 Query 46999 CA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAA 47057 || ||||| || | |||||| || ||||| ||| || || || || || | Sbjct 3397609 CATGAATCGAGAAGCGAGATTCTCTAATACGATTCCGTCAGATGCGGCGAAGAAAGCGAG 3397668 Query 47058 TACATGTTTAATAAAATATTTTTCATCG--GTAGTCAGT-TTATTCCAGTCATTGATATC 47114 |||||||| || || | |||| || || | | | || | |||||| | | || Sbjct 3397669 GACATGTTTGATGAAGTGACGTTCACCGTCGTTGAGATTGTTTTCCCAGTCGCGGTTGTC 3397728 Query 47115 TTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT 47174 | ||||| ||||||||||||||| |||||||| || || || |||||||| ||||| | Sbjct 3397729 CTGTGATAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTTTTGTACATTTC 3397788 Query 47175 CCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 ||| || | | || || || || || ||| ||||| | ||| Sbjct 3397789 CCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 3397833 Score = 100 bits (110), Expect = 4e-16 Identities = 281/427 (66%), Gaps = 6/427 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || ||||| ||||||||||| |||||||||||||| |||| | || ||| Sbjct 3396756 TTTCTGATAATCACCAACACGTTTCTCAAAAAAATTAGTTTTTCCTTGAAGCGAGATAAG 3396815 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||| ||||||||||||| |||||| || | || | || | | | Sbjct 3396816 TTCCATCCAATCAAACGGATTTGTAACACCGTACACCTTCCCGTACCCAAGCGCACCCAA 3396875 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || ||||| ||||| || || |||||| |||||| |||| ||||| || | | Sbjct 3396876 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCAA 3396935 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | ||| || || || | ||||||| || || ||| || || | | || Sbjct 3396936 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACGAT 3396995 Query 46578 CGATGTTACTGTTTCCTCACTTGG--TGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || | || ||| ||||| | | | | || ||| || | | | || || Sbjct 3396996 TGACTTCACGCGTTCTTCACTAAGCTTCGTTTTGAGAAGTGTGTAGAGA--AGGCAAGCG 3397053 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 ||||| || || || ||||| || | || |||||||| |||||||| || |||||| Sbjct 3397054 AAATCGCAGTGTAGTCCTTCGTCACGTGAGATCAATTCGTTGGAAAATGTTAGTCCAGGC 3397113 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAG-ATCCAGAAAAGAATATGCC 46754 || ||||| || || || ||||| || || | | |||| ||| || ||||| || || Sbjct 3397114 ATGAGTCCTCGTTTCTTTAGCCAGAAGATTG-AACAAAAGCTTCCGGAGAAGAAGATACC 3397172 Query 46755 TTCTACA 46761 ||| ||| Sbjct 3397173 TTCAACA 3397179 >seq4 Length=23328337 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||||| || || | |||||||||||||||||||||||| | | ||| | | || Sbjct 501677 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATCAAATG 501618 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| || | | || ||||| | ||| || || || ||||| || | ||||| Sbjct 501617 GTAAGTTTGGATTGCGGAATCAATATCGTCCTTG-TGGATACCAACAGCAACCCTCATCA 501559 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 ||| || ||||| | ||| ||| | | | |||||| | ||| ||| | || | Sbjct 501558 GCATGTGTTGAGGCCTTTCAACAACTGTCCCTTGGACTTTCAAGAGGTACGATCTCTCAA 501499 Query 77172 AAGTTTTAAAACCAAAATA 77190 ||||||||| ||||| || Sbjct 501498 GAGTTTTAAATCCAAAGTA 501480 >seq2 Length=19320864 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | ||| || | | |||||||| ||||| ||| ||||||| Sbjct 4060746 CTCTCTTTCATACTTTGTGTACAGTCTCTCAAATTCTGTGCCCCAGCAATCTGCCAAACC 4060687 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| ||||| | ||||||||||| ||||| | || || | | ||| || Sbjct 4060686 TGGAGCTTCATTAGGACAAAACAATGACCACTTCCCATCATGTTTGACTCTCTCCATGAA 4060627 Query 76612 GAGATCAGGTATCCATAGAGCAATA 76636 ||||| || ||||| ||||| ||| Sbjct 4060626 AAGATCTGGAATCCAGAGAGCTATA 4060602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712928197470720