Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq2 89.7 4e-13
>seq2
Length=19320864
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| |||||||| || |||||||| |||||||||||||| |||| |||
Sbjct 9126928 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9126869
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || ||| | || ||| || ||| || || ||||| | || |||||
Sbjct 9126868 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9126809
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| |||||||| | ||| || || || | || || | || | || ||||| |||
Sbjct 9126808 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9126749
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || ||||| |||||||| ||||| ||| | ||||| | |||||
Sbjct 9126748 ATCCAGAAAGAGTCTACACTTCATTTGGTGCTTCGTCTTAGAGGTGG 9126702
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| |||||||| || |||||||| |||||||||||||| |||| |||
Sbjct 9215709 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9215650
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || ||| | || ||| || ||| || || ||||| | || |||||
Sbjct 9215649 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9215590
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| |||||||| | ||| || || || | || || | || | || ||||| |||
Sbjct 9215589 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9215530
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| || ||||| |||||||| ||||| ||| | ||||| | |||||
Sbjct 9215529 ATCCAGAAAGAGTCTACACTTCATTTGGTGCTTCGTCTTAGAGGTGG 9215483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421807621986496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |