Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 >seq2 Length=19320864 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| || |||||||| |||||||||||||| |||| ||| Sbjct 9126928 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9126869 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| || ||| || || ||||| | || ||||| Sbjct 9126868 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9126809 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || || || | || || | || | || ||||| ||| Sbjct 9126808 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9126749 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| |||||||| ||||| ||| | ||||| | ||||| Sbjct 9126748 ATCCAGAAAGAGTCTACACTTCATTTGGTGCTTCGTCTTAGAGGTGG 9126702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||| || |||||||| |||||||||||||| |||| ||| Sbjct 9215709 ATGCAGATTTTTGTGAAGACGTTGACTGGCAAAACCATTACTTTGGAGGTTGAAAGTTCA 9215650 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| || ||| || || ||||| | || ||||| Sbjct 9215649 GATACTATTGATAATGTTAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCGGATCAG 9215590 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||| | ||| || || || | || || | || | || ||||| ||| Sbjct 9215589 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGTCGCACACTCGCTGATTACAAT 9215530 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| |||||||| ||||| ||| | ||||| | ||||| Sbjct 9215529 ATCCAGAAAGAGTCTACACTTCATTTGGTGCTTCGTCTTAGAGGTGG 9215483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421807621986496