Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq5 104 2e-17
>seq5
Length=21221946
Score = 104 bits (114), Expect = 2e-17
Identities = 206/303 (68%), Gaps = 3/303 (1%)
Strand=Plus/Plus
Query 23730 AATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATC 23789
||| |||||||| || |||||| | | | |||| |||||| | ||||| |||||
Sbjct 3397459 AATCGTTTCAATGGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATC 3397518
Query 23790 AATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAA 23849
| || | ||||||||| || || || ||||||||||| || ||||| || || || ||
Sbjct 3397519 GAGAAGGAGACTATACATCTCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAA 3397578
Query 23850 ACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAAC 23909
| | || || || | ||||||||| | |||| ||| | ||| || ||
Sbjct 3397579 AGCACGCGCCTCCGAGACTTGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATAC 3397638
Query 23910 AATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC--A 23967
|| || ||| || || |||||||| || |||| ||| || || || | |||| |
Sbjct 3397639 GATTCCGTCAGATGCGGCGAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTC 3397698
Query 23968 GTTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCA 24026
||||| | | |||| ||| || | || | ||||| ||| ||||| ||| | |||||
Sbjct 3397699 GTTGAGATTGTTTTCCCAGTCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCA 3397758
Query 24027 AAA 24029
||
Sbjct 3397759 GAA 3397761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521483463054400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |