Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 >seq5 Length=21221946 Score = 104 bits (114), Expect = 2e-17 Identities = 206/303 (68%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 23730 AATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATC 23789 ||| |||||||| || |||||| | | | |||| |||||| | ||||| ||||| Sbjct 3397459 AATCGTTTCAATGGCACGAAAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATC 3397518 Query 23790 AATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAA 23849 | || | ||||||||| || || || ||||||||||| || ||||| || || || || Sbjct 3397519 GAGAAGGAGACTATACATCTCCGAGTGGATATTTTCAATCGCGATCTGGAAACCGTAGAA 3397578 Query 23850 ACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAAC 23909 | | || || || | ||||||||| | |||| ||| | ||| || || Sbjct 3397579 AGCACGCGCCTCCGAGACTTGAACATCGGACATGAATCGAGAAGCGAGATTCTCTAATAC 3397638 Query 23910 AATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC--A 23967 || || ||| || || |||||||| || |||| ||| || || || | |||| | Sbjct 3397639 GATTCCGTCAGATGCGGCGAAGAAAGCGAGGACATGTTTGATGAAGTGACGTTCACCGTC 3397698 Query 23968 GTTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCA 24026 ||||| | | |||| ||| || | || | ||||| ||| ||||| ||| | ||||| Sbjct 3397699 GTTGAGATTGTTTTCCCAGTCGCGGTTGTCCTGTGATAGATCTACTTCTTCAGCGGTCCA 3397758 Query 24027 AAA 24029 || Sbjct 3397759 GAA 3397761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521483463054400