Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq7 107 2e-18 seq4 102 8e-17 seq2 95.1 1e-14 >seq6 Length=25113588 Score = 113 bits (124), Expect = 4e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||||||||| ||| || || ||||||||||||||| ||||| | Sbjct 22900891 CCTCCACGCAGACGTAACACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 22900832 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | |||| || || ||||| |||||||| |||| | ||| ||||||| ||| Sbjct 22900831 AAAGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 22900772 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||| |||||| || | || |||| || | | | ||||| ||| ||| Sbjct 22900771 ATACCCTCTTTGTCC-TGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCT---CTC 22900716 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || |||| |||||| ||||| || ||||| Sbjct 22900715 CACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22900665 Score = 113 bits (124), Expect = 4e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || || ||||||||| ||||| ||||||| Sbjct 23404874 GCCACCACGGAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 23404815 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || || |||||||| || ||||| || || ||||| ||||||| || Sbjct 23404814 CAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 23404755 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACT 41810 | | ||||| ||| ||| || ||||| || | || | |||| |||| | Sbjct 23404754 GATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---T 23404699 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||| ||| || || || || ||||| ||||| ||||||||||||||| Sbjct 23404698 CCACCTCCAGCGTGATAGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCATG 23404646 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| || |||| || || || ||||||||| ||||| ||||| | Sbjct 23404417 CCACCACGTAGACGCAAGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 23404358 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || ||||||||||||||||| |||| | ||| ||||||| || Sbjct 23404357 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 23404298 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||||| ||| ||| || |||| ||| | | | || || ||| ||| Sbjct 23404297 ATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTGTCAATGGTATCAGAGCT---CTC 23404242 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 23404241 TACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 23404191 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||||||||| ||||| ||||| | ||||| | | || || Sbjct 22758815 ACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTTCTGCCATCCTCC 22758874 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||| |||||||| |||| | ||| || |||| |||| | |||||| || || Sbjct 22758875 AACTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCT-TG 22758933 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || || | ||| | | | |||||| ||||||||| | || ||||| || Sbjct 22758934 AATCTTGGCCTTCACGTTGTCGATAGTGTCAGAACTCTCCACCTCAAGAGTAATCGTCTT 22758993 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| |||||||||||||| Sbjct 22758994 CCCCGTTAGGGTCTTGACGAAAATCTGCAT 22759023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||| | Sbjct 22758341 CCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 22758400 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || |||||||| || ||||| || || ||||| ||||||| || Sbjct 22758401 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 22758460 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811 | | ||||||||| ||| || ||||| || | || | |||| |||| || Sbjct 22758461 ATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TC 22758516 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || || || |||||||||||||| Sbjct 22758517 TACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAAATCTGCAT 22758567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||| || || || ||||| | Sbjct 22901575 CCACCACGGAGACGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGCC 22901516 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || ||||| || || ||||| || || ||||| ||||||| || Sbjct 22901515 AAGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 22901456 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTC---GCTCGACTC 41811 | | ||||||||| ||| || ||||| || | || | |||| |||| || Sbjct 22901455 ATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAGCTC---TC 22901400 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || || || || || ||||| ||||| |||||||||||||| Sbjct 22901399 TACCTCGAGGGTAATGGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCAT 22901349 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||||||||| ||||| ||||| | ||||| | | || || Sbjct 22900645 ACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTTCTGCCATCCTCC 22900586 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||| |||||||| |||| | ||| || |||| |||| | |||||| || | Sbjct 22900585 AACTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCTTGG 22900526 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||||| || | | | ||||| |||||| || | || || ||||| Sbjct 22900525 ATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAACTCTCCACTTCAAGAGTAATAGTTTT 22900467 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || ||||| |||||||||||||| Sbjct 22900466 TCCCGTTAGGGTCTTGACGAAAATCTGCAT 22900437 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || || ||||||||| ||||| || || | Sbjct 22901119 CCTCCACGGAGACGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCC 22901060 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || | ||| || |||||||| |||| | ||| ||||||| || Sbjct 22901059 AAGGTACGACCATCCTCCAACTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 22901000 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | | ||||| ||| ||| || ||||| || | || |||||| |||||| Sbjct 22900999 ATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATAGTGTCTGAACTCTCCAC 22900941 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| || ||||||||||| Sbjct 22900940 CTCCAAGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 22900893 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || || ||| ||||| ||||| ||||| | || || | Sbjct 905429 AGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCTT 905488 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| ||||| || || || | ||||||||||| |||| | ||| Sbjct 905489 CCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGAATTCCTTCC 905548 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| || | | ||||| ||| ||||| | || Sbjct 905549 TTGTCC-TGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCAACCTCGAGGGT 905607 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| || || ||||| || || |||||||| Sbjct 905608 AATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 905646 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || |||||||||||||| || || | Sbjct 905192 CCACCACGCAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGCT 905251 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 | || || | || || ||||| || || ||||| || || | ||||||||| | ||| Sbjct 905252 AAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGTGGG 905311 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 | | || ||||||||| ||| | || || | || | | | ||| || || ||| Sbjct 905312 ATCCCT-TCCTTGTCC-TGAATCTTAGCCTTGAC-ATTATCAATTGTGTCT-GAGCTCTC 905367 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| ||||| || || || || || ||||| || || |||||||| Sbjct 905368 CACCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 905418 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||||| || || || ||||||||||||||| ||||| | Sbjct 22758569 CCTCCACGGAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 22758628 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || || || || ||||| || |||| | ||| ||||||| || Sbjct 22758629 AAAGTTCTGCCATCTTCAAGTTGTTTCCCGGCAAAGATCAATCTCTGCTGGTCCGGAGGG 22758688 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||| |||||| || | || |||| || | | | ||||| ||| ||| Sbjct 22758689 ATACCCTCTTTGTCC-TGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGCT---CTC 22758744 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || |||| |||||| ||||| || ||||| Sbjct 22758745 CACCTCCAAAGTGATAGTCTTTCCAGTCAACGTCTTGACGAAGATTTGCAT 22758795 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| || |||| || || || ||||||||||||||| || || | Sbjct 23404189 CCTCCACGCAGACGCAAGACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAATCAGCC 23404130 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || | | || || || ||||| |||||||| |||| | ||| ||||||| || Sbjct 23404129 AAAGTTCTGCCATCTTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 23404070 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | ||| |||| | || | || |||| ||| | | | ||||| ||| ||| Sbjct 23404069 ATACCCTCTTTGT-CTTGGATCTTGGCTTTCACGTTGTCGATGGTGTCAGAGCT---CTC 23404014 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || |||| ||||| || ||||||||||| Sbjct 23404013 CACCTCCAAAGTGATAGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 23403963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||| || || ||||||||| ||||| || || | Sbjct 10623000 CCACCACGAAGACGAAGAACCAAATGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCA 10622941 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || ||||| || || ||||| || || | ||||||||||| || Sbjct 10622940 AGTGTCCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 10622881 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 || | ||||||||| ||| | || || | ||| | | ||||| ||| ||| Sbjct 10622880 ACCCCTTCCTTGTCC-TGAATCTTGGCCTTGACGTTATCAATCGTGTCTGAGCT---CTC 10622825 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||||| || || || || || |||| ||||| || || || |||||| Sbjct 10622824 AACCTCCAAAGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCATG 10622773 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| || || | Sbjct 8748324 CCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCA 8748383 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 || || || | || || ||||| || || ||||| || || | |||||||||| | ||| Sbjct 8748384 AGAGTCCGACCATCCTCAAGCTGTTTCCCAGCGAAGATGAGTCTCTGTTGGTCCGGAGGG 8748443 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 | | || ||||||||| ||| | || || | || | | | ||| || || ||| Sbjct 8748444 ATCCCT-TCCTTGTCC-TGAATCTTAGCCTTGAC-ATTATCAATTGTGTCT-GAGCTCTC 8748499 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || ||||| |||| |||||||| || || ||||| Sbjct 8748500 AACCTCCAAGGTAATAGTCTTACCTGTCAAAGTCTTTACAAAGATTTGCAT 8748550 >seq7 Length=24649197 Score = 107 bits (118), Expect = 2e-18 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || || || || ||||||||||||||| || || | Sbjct 18994127 GCCCCCGCGAAGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCTGC 18994186 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGG 41753 |||||||| |||| || |||||||| ||||| || || || | ||| |||||| | || Sbjct 18994187 AAGGGTGCGACCGTCCTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGGTCCGGAGG 18994246 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CT 41810 || | || ||||| | | ||| | || |||| || | || | ||| || || || Sbjct 18994247 GATCCCT-TCCTTAT-CTTGAATCTTAGCTTTAAGATTGTCA-ATTGTGTCT-GAGCTCT 18994302 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||||| ||||| ||||| || || || || || || || ||||||||| Sbjct 18994303 CAACCTCCAAAGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATG 18994355 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || |||||| || ||||| || || | Sbjct 18993672 CCACCACGAAGACGCAACACAAGGTGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGCA 18993731 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || |||||||| ||||| || || | ||||||||||| || Sbjct 18993732 AGGGTGCGACCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGG 18993791 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | || |||| | ||| | || |||| ||| | | | ||||| ||| ||| Sbjct 18993792 ATTCCTTCTTTGT-CTTGAATCTTAGCTTTCACGTTGTCAATGGTGTCTGAGCT---CTC 18993847 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || |||||||| || || || || || || |||||||| Sbjct 18993848 AACTTCTAGAGTAATGGTTTTACCGGTAAGAGTTTTCACAAATATCTGCAT 18993898 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || ||||| || || ||||||||| ||||| || || | Sbjct 18994355 GCCACCGCGAAGACGAAGTACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGC 18994414 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || ||||||||||| |||||||| || || | ||||||||||| || Sbjct 18994415 AAGAGTACGGCCATCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGTTGGTCCGTAGG 18994474 Query 41755 AACGCTCTCCTTGTC 41769 | | |||||||| Sbjct 18994475 GATTCCTTCCTTGTC 18994489 >seq4 Length=23328337 Score = 102 bits (112), Expect = 8e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || ||||| |||||||| ||||| || |||| Sbjct 22908956 CCACCACGGAGACGAAGGACAAGGTGAAGCGTTGATTCCTTCTGGATGTTGTAATCGGCT 22908897 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || |||| ||||||||||| |||||||| |||| ||||| || |||| || Sbjct 22908896 AAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGATCCGGTGGG 22908837 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | |||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 22908836 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCAGAGGACTCGA 22908779 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || ||||| || ||||| || || || ||||| |||||||| || Sbjct 22908778 CCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 22908727 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || || ||| ||||| ||||| ||||| | || || | Sbjct 15771350 AGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCTT 15771409 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| ||||| || || || | ||||||||||| |||| | ||| Sbjct 15771410 CCGTCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGAATTCCTTCC 15771469 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| || | | ||||| ||| ||||| | || Sbjct 15771470 TTGTCC-TGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCAACCTCGAGGGT 15771528 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| || || ||||| || || |||||||| Sbjct 15771529 AATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCAT 15771567 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || |||||||||||||| || || | Sbjct 15771113 CCACCACGCAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGCT 15771172 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 | || || | || || ||||| || || ||||| || || | ||||||||| | ||| Sbjct 15771173 AAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGTGGG 15771232 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTC 41811 | | || ||||||||| ||| | || || | || | | | ||| || || ||| Sbjct 15771233 ATCCCT-TCCTTGTCC-TGAATCTTAGCCTTGAC-ATTATCAATTGTGTCT-GAGCTCTC 15771288 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| ||||| || || || || || ||||| || || |||||||| Sbjct 15771289 CACCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 15771339 >seq2 Length=19320864 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || |||||||| ||||| ||||| | Sbjct 9215255 CCACCACGAAGACGCAACACAAGGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCAGCC 9215314 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC-GGG 41754 | || || | || |||||||| || || ||||| || || | ||||||||| | ||| Sbjct 9215315 AAAGTCCGACCATCCTCGAGCTGTTTACCAGCGAAGATGAGTCTCTGTTGGTCTGGTGGG 9215374 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 | | || ||||||||| ||| || |||| ||| | | |||||| |||| | Sbjct 9215375 ATCCCT-TCCTTGTCCTGGATCTTA-GCTTTAACATTATCGATAGTGTCTGAGCTC---T 9215429 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| || || || || || || || ||||| || ||||||||||| Sbjct 9215430 CAACCTCCAAAGTAATGGTCTTTCCAGTGAGGGTCTTCACAAAAATCTGCAT 9215481 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || || ||| ||||| || || || || | ||| ||||| Sbjct 9126711 AGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGA 9126770 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || || || || || | ||| || |||| || | | ||| Sbjct 9126771 CCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCC 9126830 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACT--CCACCTCCACCG 41822 || ||| ||| | || |||| ||| || | || || ||| | ||||||| | Sbjct 9126831 TTATCC-TGAATCTTAGCTTTAACATTATCA-ATAGTATCTGAACTTTCAACCTCCAAAG 9126888 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| || |||| |||||| || ||||||||||| Sbjct 9126889 TAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9126928 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||| || || ||| ||||| || || || || | ||| ||||| Sbjct 9215492 AGACGAAGCACCAAATGAAGTGTAGACTCTTTCTGGATATTGTAATCAGCGAGTGTGCGA 9215551 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || || || || || | ||| || |||| || | | ||| Sbjct 9215552 CCGTCCTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCC 9215611 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACT--CCACCTCCACCG 41822 || ||| ||| | || |||| ||| || | || || ||| | ||||||| | Sbjct 9215612 TTATCC-TGAATCTTAGCTTTAACATTATCA-ATAGTATCTGAACTTTCAACCTCCAAAG 9215669 Query 41823 TTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| || |||| |||||| || ||||||||||| Sbjct 9215670 TAATGGTTTTGCCAGTCAACGTCTTCACAAAAATCTGCAT 9215709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299977955200