Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5 107 4e-18 seq3 100 6e-16 seq1 100 6e-16 seq4 98.7 2e-15 seq2 98.7 2e-15 >seq5 Length=26975502 Score = 107 bits (118), Expect = 4e-18 Identities = 576/895 (64%), Gaps = 44/895 (5%) Strand=Plus/Plus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||||||||| || | || ||||| ||||||||||| || | ||| Sbjct 16408214 TTCTGTATGTTCCCAATCCAATACCCACAGATTTGGGAGATGTACAAGAAAGCCGAAGCA 16408273 Query 229810 ACTTTCTGGACCACTGAGGAAGT---TC-CTCTGAACGCAGACGTCGTCGACTGGCGTGA 229865 | |||||||| | || ||||| || |||| || || || ||||||| || Sbjct 16408274 TCCTTCTGGACAGCCGAAGAAGTCGATCTCTCTCAAGACAATCG----CGACTGG---GA 16408326 Query 229866 GAAACTCAAT----GACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAG 229921 ||||||| | ||||||||||||| ||||| |||||| |||| | || ||||| | Sbjct 16408327 -AAACTCACTAACCAACGACGAACGTCACTTCATTAAACACGTCCTCGCCTTCTTCGCCG 16408385 Query 229922 GCTCCGATGGTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTT 229980 || || || || || | || ||||| | | | | || ||| || || | | Sbjct 16408386 CATCAGACGGAATCGTTCTCGAGAATCT-CTCAACTAGATTCATGTCCGATGTTCAGATC 16408444 Query 229981 CCAGAGGCACGGCAATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGA 230036 |||| || || || || | | ||||| ||| | ||| ||| || || || Sbjct 16408445 TCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATTGA--GAA--TATTCACTCCGA 16408500 Query 230037 ACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTT 230096 ||| ||| ||| ||||| || ||| ||| | |||| | | | ||||| Sbjct 16408501 GATGTATAGTCTCCTTCTCGACACGTATATCAAAGACAACAAAGAGAGAGATCATCTTTT 16408560 Query 230097 TGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCT 230156 | ||| || |||| ||| || || || || ||| | |||||| ||||||| | Sbjct 16408561 TCGTGCAATCGAAACCATTCC--TTGTGACGAAAAAAGCAGAATGGGCTATGAAATGGAT 16408618 Query 230157 AGAAC--CTGGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATT 230214 ||| | ||| | || || ||| | |||| || | | || ||||||||||| Sbjct 16408619 -CAACGGATCTCAAAGC-TTCGCTGAGAGAATCGTAGCGTTTGCTTGCGTTGAAGGTATA 16408676 Query 230215 CTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGC 230274 | || ||||| || || || | || || ||| || ||| |||| | |||||||| Sbjct 16408677 TTCTTCTCCGGTAGCTTTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGA 16408736 Query 230275 CTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG 230334 ||| | | || ||||| || || | ||||| ||||| || | ||| || | Sbjct 16408737 CTCACTTTTTCAAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGTGATTTC-GCTTG 16408795 Query 230335 CTT-ATGTATTCAAAGCTCC--AGAACAAGCTACCATTCGAGA-CG-GTCAAACAAATCA 230389 || || ||| | || | ||||| | | | | ||| || | ||| || Sbjct 16408796 TTTGATATAT---AGTCTTCTTAGAACTAAGTTTGA-TGAAGATCGTTTGAAAGCGATTG 16408851 Query 230390 TTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT- 230448 || || || ||||| | || | ||||| |||||||||| || | ||| ||||| Sbjct 16408852 TTTGTGATGCTGTTGAGATTGAGAGAGAGTTTGTTTGTGACGCGCTTTCTTGT-GCCTTG 16408910 Query 230449 ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTT 230508 |||| ||||| ||| | ||| | |||||||| || ||||| || || | | || Sbjct 16408911 GTTGGGATGAATCGTGAGTTGATGAGTCAGTACATTGAGTTCGTTGCTGATAGGTTGTTG 16408970 Query 230509 GTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTC 230568 | ||| ||||| | | || ||||| | || || |||| | ||||| | Sbjct 16408971 GCTGCGCTTGGGTGTGGTAAGGTGTATGGTGTGACTAATCCTTTTGATTGGATGGAATTG 16409030 Query 230569 ATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 ||||||||||| || ||||||||||| || || ||| | || |||| ||||||| Sbjct 16409031 ATTTCGCTTCAGGGTAAGACCAACTTTTTTGAGAAGAGAGTTGGTGAGTATCAGA 16409085 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 508502 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 508443 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 508442 CCCACGGTGGGC 508431 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4530474 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4530533 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4530534 CCCACGGTGGGC 4530545 >seq3 Length=23459830 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 11959166 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11959225 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 11959226 CCCCACGGTGGGC 11959238 Score = 98.7 bits (108), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTA-TTGG 230453 || || || |||| ||| | ||||| | || ||||| |||| || ||| || |||| Sbjct 9980276 GACGCGGTCGAAATCGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTG-CGCGTTGGTTGG 9980218 Query 230454 CATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGC 230513 |||||| ||| | ||| | ||||| || || || || || || | |||| | ||| Sbjct 9980217 GATGAACCGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGC 9980158 Query 230514 ACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTC 230573 ||||| |||| ||| |||||| || || || || | | ||||| || ||||| Sbjct 9980157 GCTTGGGTACGGGAAGGTGTACGGTGTTACTAATCCGTTCGATTGGATGGAACTTATTTC 9980098 Query 230574 GCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 ||||||||||| || || |||||||| || ||||| |||| || || Sbjct 9980097 ACTTCAAGGGAAAACGAATTTCTTCGAGAAACGTGTTGGTGATTACCA 9980050 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 20813589 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 20813530 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20813529 CCCACGGTGGGC 20813518 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 22470313 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22470254 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22470253 CCCACGGTGGGC 22470242 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 5632852 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 5632911 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5632912 CCCACGGTGGGC 5632923 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | ||||||||| || || || | || ||||| |||||||| || || | ||| Sbjct 9981009 TTCTGTATGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCA 9980950 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAA 229868 | ||||||||| | || ||||| ||| | | || ||| | ||||||| | | Sbjct 9980949 TCATTCTGGACCGCCGAAGAAGTAGATCT-ATCACAAGACAACCGCGACTGGGAAAACAG 9980891 Query 229869 ACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGA 229928 ||||| |||| |||||||| |||||||||||| |||| | ||| ||||| | || || Sbjct 9980890 TCTCAACGACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCTGCATCTGA 9980831 Query 229929 TGGTATTGTGATGGAAAATCT 229949 || || || | || ||||| Sbjct 9980830 CGGAATCGTACTAGAGAATCT 9980810 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 61373 AAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGA 61432 |||||||||||||| ||| | ||||||| | || || ||||||||||||||||| ||||| Sbjct 19007598 AAGAGATTGGGGATTTGCAGGAGATTATGTGGAAGCAATGTGGTTGATGTTGCAGCAAGA 19007539 Query 61433 TACTCCAGATGACTACGTTATTGCGAC 61459 | |||||||| |||||| | || || Sbjct 19007538 GAAGCCAGATGATTACGTTGTGGCAAC 19007512 >seq1 Length=30427671 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 17731840 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17731899 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 17731900 CCCCACGGTGGGC 17731912 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 309347 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 309288 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 309287 CCCACGGTGGGC 309276 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 604402 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 604461 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 604462 CCCACGGTGGGC 604473 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5518134 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5518075 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5518074 CCCACGGTGGGC 5518063 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7016516 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7016575 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7016576 CCCACGGTGGGC 7016587 >seq4 Length=18585056 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 33800 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 33859 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 33860 CCCACGGTGGGC 33871 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 7256415 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7256474 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7256475 CCCACGGTGGGC 7256486 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 8979656 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 8979715 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 8979716 CCCACGGTGGGC 8979727 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 11954813 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 11954754 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 11954753 CCCACGGTGGGC 11954742 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 13006306 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTCTGGTCGTGGGTTCGAGC 13006247 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13006246 CCCACGGTGGGC 13006235 >seq2 Length=19698289 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 18703678 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18703737 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18703738 CCCACGGTGGGC 18703749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823905126410