Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq5 145 8e-30
>seq5
Length=26975502
Score = 145 bits (160), Expect = 8e-30
Identities = 405/607 (67%), Gaps = 26/607 (4%)
Strand=Plus/Minus
Query 16944 TAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAA 17003
||||| | || | |||| ||| |||||||| || || | || |||||||| || |
Sbjct 16408815 TAAGAAGACTATATATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCA 16408756
Query 17004 GTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGG 17063
|||||| ||||| || | || ||||| ||||||||||| ||||| |||||||
Sbjct 16408755 ATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAAC 16408696
Query 17064 CGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGT 17123
|| || || ||||||||||| || ||| | |||||||| | | || || |||
Sbjct 16408695 AAAAGCTACCGGAGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGA 16408636
Query 17124 A-CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAA 17182
| | | | | | ||| ||||||||| |||| || ||||||| | | | |||
Sbjct 16408635 AGCTTTGAG-ATCCGTT---GATCCATTTCATAGCCCATTCTGCTTTTTTCGTCA--CAA 16408582
Query 17183 TCCATCGTTTCTATGGCCTTAA----ATAATTTCTCTTTTTCCTGTAGGTCGATTATATA 17238
|| ||||| || || || || || ||||| || ||| ||| | |||||
Sbjct 16408581 GGAATGGTTTCGATTGCACGAAAAAGATGATCTCTCTCTT---TGT-TGTCTTTGATATA 16408526
Query 17239 CGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCC 17298
||| |||| || || || ||||| |||||||| || ||||| || || || || |||||
Sbjct 16408525 CGTGTCGAGAAGGAGACTATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCC 16408466
Query 17299 GTAAAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATC--GTTCCGCTAGATT 17355
||| ||| || ||||| | || ||||| || || | ||||| ||| | |||||
Sbjct 16408465 GTAGAAGGCACGAGCTTCTGAGATCTGAACATCGGACAT-GAATCTAGTT--GAGAGATT 16408409
Query 17356 TTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTT 17415
||| ||||| ||||| |||||||| || || | | || |||||||| |
Sbjct 16408408 CTCGAGAACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACG 16408349
Query 17416 TTCGTC--CGGT--GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471
|||||| ||| || || | |||||| |||| || | ||| |||||||
Sbjct 16408348 TTCGTCGTTGGTTAGTGAGTTTTC-CCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTT 16408290
Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531
||| ||||| || || | || || || ||||| | |||||| | |||||| |
Sbjct 16408289 CGGCTGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGA 16408230
Query 17532 TGGGGAA 17538
| |||||
Sbjct 16408229 TTGGGAA 16408223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517545554714760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |