Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 145 8e-30 >seq5 Length=26975502 Score = 145 bits (160), Expect = 8e-30 Identities = 405/607 (67%), Gaps = 26/607 (4%) Strand=Plus/Minus Query 16944 TAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAA 17003 ||||| | || | |||| ||| |||||||| || || | || |||||||| || | Sbjct 16408815 TAAGAAGACTATATATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCA 16408756 Query 17004 GTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGG 17063 |||||| ||||| || | || ||||| ||||||||||| ||||| ||||||| Sbjct 16408755 ATTCGTTTGAAAAAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAAC 16408696 Query 17064 CGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGT 17123 || || || ||||||||||| || ||| | |||||||| | | || || ||| Sbjct 16408695 AAAAGCTACCGGAGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGA 16408636 Query 17124 A-CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAA 17182 | | | | | | ||| ||||||||| |||| || ||||||| | | | ||| Sbjct 16408635 AGCTTTGAG-ATCCGTT---GATCCATTTCATAGCCCATTCTGCTTTTTTCGTCA--CAA 16408582 Query 17183 TCCATCGTTTCTATGGCCTTAA----ATAATTTCTCTTTTTCCTGTAGGTCGATTATATA 17238 || ||||| || || || || || ||||| || ||| ||| | ||||| Sbjct 16408581 GGAATGGTTTCGATTGCACGAAAAAGATGATCTCTCTCTT---TGT-TGTCTTTGATATA 16408526 Query 17239 CGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCC 17298 ||| |||| || || || ||||| |||||||| || ||||| || || || || ||||| Sbjct 16408525 CGTGTCGAGAAGGAGACTATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCC 16408466 Query 17299 GTAAAAGCATCGGGCTTCCGCTATTTGAACTTC-CACGTAGAATC--GTTCCGCTAGATT 17355 ||| ||| || ||||| | || ||||| || || | ||||| ||| | ||||| Sbjct 16408465 GTAGAAGGCACGAGCTTCTGAGATCTGAACATCGGACAT-GAATCTAGTT--GAGAGATT 16408409 Query 17356 TTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTT 17415 ||| ||||| ||||| |||||||| || || | | || |||||||| | Sbjct 16408408 CTCGAGAACGATTCCGTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACG 16408349 Query 17416 TTCGTC--CGGT--GTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTT 17471 |||||| ||| || || | |||||| |||| || | ||| ||||||| Sbjct 16408348 TTCGTCGTTGGTTAGTGAGTTTTC-CCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTT 16408290 Query 17472 CGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTA 17531 ||| ||||| || || | || || || ||||| | |||||| | |||||| | Sbjct 16408289 CGGCTGTCCAGAAGGATGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGA 16408230 Query 17532 TGGGGAA 17538 | ||||| Sbjct 16408229 TTGGGAA 16408223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545554714760