Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5 129 6e-25 seq3 96.9 4e-15 >seq5 Length=26975502 Score = 129 bits (142), Expect = 6e-25 Identities = 304/453 (67%), Gaps = 17/453 (4%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 ||| ||||| || || || || ||||||||||| || | |||||| |||||||| | Sbjct 16408796 ACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAG 16408737 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || |||||| ||||||||||| ||||||||||||| | ||| || || ||||| Sbjct 16408736 TCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAA 16408677 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 |||||| ||||| | ||||| || | | || || ||| | | | | || Sbjct 16408676 TATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTTTGAGATCCGTT--- 16408620 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 ||||||||| ||||||| |||||| || |||| || ||||| || || Sbjct 16408619 GATCCATTTCATAGCCCATTCTGCTTTT--TTCGTCACAAGGAATGGTTTCGATTGCACG 16408562 Query 16441 AAACA----ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 ||| | || ||||| ||| || || | |||||||| || | || | ||| | Sbjct 16408561 AAAAAGATGATCTCTCTCTTTGTTG----TCTTTGATATACGTGTCGAGAAGGAGACTAT 16408506 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 |||| || ||||| || ||||| || || || || ||||| |||||| ||||| || | Sbjct 16408505 ACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTG 16408446 Query 16557 CTATTTGTACTTC-CACGT-AAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 || || || || || | || | ||| | || ||||| ||||| ||||| Sbjct 16408445 AGATCTGAACATCGGACATGAATCTAGTT--GAGAGATTCTCGAGAACGATTCCGTCTGA 16408388 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||| || || || || | | ||| |||||||| Sbjct 16408387 TGCGGCGAAGAAGGCGAGGACGTGTTTAATGAA 16408355 >seq3 Length=23459830 Score = 96.9 bits (106), Expect = 4e-15 Identities = 283/430 (66%), Gaps = 16/430 (4%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||||||||||| ||| ||||| |||||||| || ||||| || | | || ||| || Sbjct 9980048 TTTGGTAATCACCAACACGTTTCTCGAAGAAATTCGTTTTCCCTTGAAGTGAAATAAGTT 9980107 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTA 16031 |||| |||| || ||||||||| | | | ||| |||||| || || | | | Sbjct 9980108 CCATCCAATCGAACGGATTAGTAACACCGTACACCTTCCCGTACCCAAG---CGCACCCA 9980164 Query 16032 AT---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-A 16087 | ||||| || ||||| || ||||| |||| ||| || || | || || || | | Sbjct 9980165 AAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACGGTTCATCCCAACCA 9980224 Query 16088 AGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || || ||||| || | | ||| | | || || | ||||| || | | Sbjct 9980225 ACGCGCAC-GGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGACCGCGTCGCAGACG 9980283 Query 16148 ATATCGGTGGCTCGTGTTTC---AGACGGTGTATGGTTTAG-GTGTTTAAACATTAGACA 16203 || | | ||| ||| | | ||| | | ||| |||| | | |||||| Sbjct 9980284 ATTGATTTCACGCGTTCTTCGCTAAGCTTTGTTTTGAGTAGCGTGT----AGAGTAGACA 9980339 Query 16204 CGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCC 16263 ||||| || || |||| |||||||| | ||| | |||||| || || ||||| || Sbjct 9980340 AGCGAAATCACAGTGTAAACCTTCGTCACGTGAGATCAATTCGTTTGAGAATGTTAATCC 9980399 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323 ||||| |||||||||||| | |||||| || | | ||| || || ||||| || Sbjct 9980400 AGGCATGAGTCCTCGTTTCTTCAGCCAGAAGATTGAACAAAAGCTTCCGGAGAAGAAGAT 9980459 Query 16324 ACCCTCAACA 16333 ||| |||||| Sbjct 9980460 ACCTTCAACA 9980469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414355251240