Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq5 205 1e-47
seq3 129 7e-25
seq2 91.5 2e-13
>seq5
Length=26975502
Score = 205 bits (226), Expect = 1e-47
Identities = 432/631 (68%), Gaps = 25/631 (4%)
Strand=Plus/Minus
Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188
|||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| |||||
Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742
Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 24247
|||||||| ||||||| || || || || | ||| ||||| || |||| | | || ||
Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGA 16408683
Query 24248 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC 24307
||||| || ||||| || ||||| || | | ||| || | | || ||
Sbjct 16408682 GAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAA----GCTTTGAG 16408627
Query 24308 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363
|| || ||||| || |||||| || || || || | ||||||| || || || |
Sbjct 16408626 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGA 16408569
Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423
| ||| ||| |||| | | | || || | ||||| | ||| || || | | ||||
Sbjct 16408568 TTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGAC 16408509
Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483
||||||| || || ||||| || ||||| || ||||| ||||||||||| | ||| |
Sbjct 16408508 TATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 16408449
Query 24484 CGGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542
| | ||||| || || ||| |||| || | ||| || || ||||||||
Sbjct 16408448 CTGAGATCTGAACATC-GGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCT 16408390
Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT--GTTAG 24598
|| || || || || | || ||||| || || | |||||| |||| || ||
Sbjct 16408389 GATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAG 16408330
Query 24599 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 24655
||| | ||| || |||| |||| ||| | ||| |||||||| ||||||| || ||
Sbjct 16408329 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGA 16408274
Query 24656 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
||| || || || || ||||| | ||| || | | ||||| ||||| || ||| ||
Sbjct 16408273 TGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGAA 16408214
Query 24716 TCTATTTGGATTTTTTGCAAGGATTGGTTCC 24746
|| || ||| || || ||||||||||||
Sbjct 16408213 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183
>seq3
Length=23459830
Score = 129 bits (142), Expect = 7e-25
Identities = 283/418 (68%), Gaps = 7/418 (2%)
Strand=Plus/Plus
Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371
||||| || |||||| | || ||||| || ||||| ||||| || || ||| |
Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662
Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431
||||||| | | | || || ||||||| | ||| ||||| | | |||||||||||
Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722
Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491
||||| || ||||||||||| || || || || ||||||||| | ||||| | |
Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACT 9980782
Query 24492 TGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550
|| || || ||| || || || | ||| || || ||||||||| || ||
Sbjct 9980783 TGAACATC-GGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGC 9980841
Query 24551 AAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTCTGGTGTTAGT-TTATTCC 24606
|| || || | || ||||| || || | || |||| | || | | || | ||
Sbjct 9980842 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTC-GTTGAGACTGTTTTCCC 9980900
Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666
| || | | |||| |||| ||| |||||||| | ||||| |||||||| || || |
Sbjct 9980901 AGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTT 9980960
Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724
|||| ||||| | |||||| | | || |||||||| || ||| ||||| | |||
Sbjct 9980961 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 9981018
>seq2
Length=19698289
Score = 91.5 bits (100), Expect = 2e-13
Identities = 154/223 (69%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243
|||||| || || | || | ||| || | || | || | || ||| |||| ||||||
Sbjct 9294859 TCCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACC 9294800
Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303
||| |||| ||||| || || || || ||||| | |||||||||||| || |||
Sbjct 9294799 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGA 9294740
Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363
| ||| || ||||| || ||| || | || || ||| | || ||||| ||
Sbjct 9294739 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 9294680
Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406
|||||| || |||||||| ||||| | |||||| ||||||
Sbjct 9294679 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593721548049360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |