Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq4 93.3 4e-14
seq5 89.7 4e-13
>seq4
Length=18585056
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| ||||| ||| | || || || || ||| | ||||| || || |||||||| |||
Sbjct 1279115 GACAAAGAGGGTATCCCACCGGACCAGCAGAGATTGATCTTCGCCGGAAAACAACTTGAA 1279056
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| | |||| |||| || ||||| ||||||||||| ||||| |||||| |||||||
Sbjct 1279055 GATGGTAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACACTTCACTTGGTGTTG 1278996
Query 29175 CGATTACGAGGAGG 29188
|| | || |||||
Sbjct 1278995 CGTCTCCGTGGAGG 1278982
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| ||||| ||| | || || || || ||| | ||||| || || |||||||| |||
Sbjct 2719108 GACAAAGAGGGTATTCCTCCGGACCAGCAGAGATTGATCTTCGCCGGAAAACAACTTGAA 2719167
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174
||| || |||| ||||||| ||||| ||||||||||| || || || ||| |||| ||
Sbjct 2719168 GATGGCAGAACTTTGGCCGACTACAACATTCAGAAGGAGTCCACACTCCACTTGGTCTTG 2719227
Query 29175 CGATTACGAGGAGG 29188
|| | || |||||
Sbjct 2719228 CGTCTGCGTGGAGG 2719241
>seq5
Length=26975502
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
|||||||| ||| | |||||| | || ||||| || || || ||| || | |
Sbjct 772896 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACTATCACTCTCGAGGTTGAGAGCTCT 772837
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | | || ||||| ||| ||| || || ||||| | || |||||
Sbjct 772836 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 772777
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||| | || || || || ||||| || |||||| | || |||||||||||||
Sbjct 772776 CAAAGATTAATATTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 772717
Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|||||||| ||||| || ||||| |||| | || ||| |||| ||
Sbjct 772716 ATTCAGAAAGAATCAACCCTTCATTTGGTTCTCCGTTTAAGAGGTGG 772670
Score = 82.4 bits (90), Expect = 7e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| |||||||| | || ||| ||||| |||||||||||||| ||||||||||| |||
Sbjct 14953195 GACAAAGAAGGGATCCCACCAGACCAACAGAGACTTATCTTTGCAGGCAAACAACTCGAA 14953136
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| || | || |||||||| || |||||||| || || |||||
Sbjct 14953135 GATGGTCGGACGCTTGCTGATTACAACATCCAGAAGGAGTCAACACTTCA 14953086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428335963457585
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |