Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq4 93.3 4e-14 seq5 89.7 4e-13 >seq4 Length=18585056 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || || || || ||| | ||||| || || |||||||| ||| Sbjct 1279115 GACAAAGAGGGTATCCCACCGGACCAGCAGAGATTGATCTTCGCCGGAAAACAACTTGAA 1279056 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | |||| |||| || ||||| ||||||||||| ||||| |||||| ||||||| Sbjct 1279055 GATGGTAGAACTTTGGCTGACTACAACATTCAGAAGGAGTCTACACTTCACTTGGTGTTG 1278996 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 1278995 CGTCTCCGTGGAGG 1278982 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | || || || || ||| | ||||| || || |||||||| ||| Sbjct 2719108 GACAAAGAGGGTATTCCTCCGGACCAGCAGAGATTGATCTTCGCCGGAAAACAACTTGAA 2719167 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || |||| ||||||| ||||| ||||||||||| || || || ||| |||| || Sbjct 2719168 GATGGCAGAACTTTGGCCGACTACAACATTCAGAAGGAGTCCACACTCCACTTGGTCTTG 2719227 Query 29175 CGATTACGAGGAGG 29188 || | || ||||| Sbjct 2719228 CGTCTGCGTGGAGG 2719241 >seq5 Length=26975502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | |||||| | || ||||| || || || ||| || | | Sbjct 772896 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACTATCACTCTCGAGGTTGAGAGCTCT 772837 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| ||| ||| || || ||||| | || ||||| Sbjct 772836 GACACCATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGCATTCCTCCGGATCAG 772777 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || || || || ||||| || |||||| | || ||||||||||||| Sbjct 772776 CAAAGATTAATATTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACAAC 772717 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| || ||||| |||| | || ||| |||| || Sbjct 772716 ATTCAGAAAGAATCAACCCTTCATTTGGTTCTCCGTTTAAGAGGTGG 772670 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||| ||||| |||||||||||||| ||||||||||| ||| Sbjct 14953195 GACAAAGAAGGGATCCCACCAGACCAACAGAGACTTATCTTTGCAGGCAAACAACTCGAA 14953136 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| || | || |||||||| || |||||||| || || ||||| Sbjct 14953135 GATGGTCGGACGCTTGCTGATTACAACATCCAGAAGGAGTCAACACTTCA 14953086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335963457585