Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq5 134 1e-26 seq4 98.7 8e-16 seq1 98.7 8e-16 seq3 95.1 1e-14 >seq5 Length=26975502 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | || ||||||||||||||||| ||||| || || ||| |||| Sbjct 772457 AGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTTCTTCCGTCT 772516 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | |||||||||||||| ||| || | ||||||||||| Sbjct 772517 TCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCC 772576 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| ||| || | | | | ||| ||| | ||| |||| ||||||||| Sbjct 772577 TGGATCTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATGGTC 772636 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || | || |||||||| |||||||| Sbjct 772637 TTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || |||||| |||| || | ||| || || || || ||||| || || || Sbjct 14953290 CCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCA 14953349 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || || |||||||| || ||| | || |||||||| || ||| || Sbjct 14953350 AGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 14953409 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 || ||||||||||| |||||| ||| || | | | | ||| || ||| | Sbjct 14953410 ACTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACT 14953469 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||| || ||||| | ||| ||||||||||| ||||| Sbjct 14953470 TCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 ||| ||||||||||| || || ||||| || || || | || || ||||| || || Sbjct 6974038 AGTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCATCTTCAAGCTGCTTACC 6974097 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 || |||||||||| ||||||||| || | ||||||||||| ||||||| || Sbjct 6974098 AGCGAAAATAAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTT 6974157 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 || | | | | ||| ||| | || |||| ||||||||| ||||| || | || Sbjct 6974158 GACGTTGTCAATAGTGTCAGAGCTTTCAACCTCCAAGGTAATGGTTTTGCCAGTCAGAGT 6974217 Query 21158 TTTGACAAATATTTGCAT 21175 |||||||| || ||||| Sbjct 6974218 CTTGACAAAGATCTGCAT 6974235 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||| | ||| | || ||||||||||| ||||| || || || || || | | || Sbjct 6973568 AGCACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGTCCATCT 6973627 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || ||| | || ||||||||||| || || | ||||||||||| Sbjct 6973628 TCAAGCTGTTTTCCAGCAAATATGAGTCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCT 6973687 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || || | ||| |||| || || ||| Sbjct 6973688 TGAATCTTTGCCTTGACATTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTC 6973747 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||||| || || ||||| || ||||| Sbjct 6973748 TTGCCAGTTAAGGTCTTCACAAAAATCTGCAT 6973779 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| ||| | || || || || |||||||| || || |||| ||| || | || Sbjct 772684 GAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATC 772743 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || |||||||| || || | || | ||| ||||| ||| || | |||||||||||| Sbjct 772744 TTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTC 772803 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | ||| || ||| | ||| || | || || || Sbjct 772804 CTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATAGT 772863 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||| || | ||||| || || |||||||| Sbjct 772864 CTTGCCAGTGAGTGTTTTCACGAAGATTTGCAT 772896 >seq4 Length=18585056 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||||||||||| || ||||| ||||| || Sbjct 1279210 CCACCACGGAGCCTGAGAACAAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCA 1279269 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | | ||||||| ||| || || || | || | |||||||||||| || Sbjct 1279270 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCCGGAGGA 1279329 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | ||| || ||| |||| Sbjct 1279330 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAACTCTCCACC 1279389 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||| || ||||| || ||||| || || ||||| Sbjct 1279390 TCAAGAGTAATCGTCTTTCCCGTTAAGGTCTTGACGAAAATCTGCAT 1279436 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| || | || |||||||| |||||||| ||||| |||| ||| | || || Sbjct 1278999 CACCAAGTGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGCCAAAGTTCTACCATCTTC 1279058 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 || ||||| || || | || | ||||||||||||| || | || || ||||| Sbjct 1279059 AAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGGTCCGGTGGGATACCCTCTTTGTCCTG 1279118 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| ||| || | | ||| ||| ||| | |||| |||| || || ||||| Sbjct 1279119 GATCTTGGCTTTGACATTGTCGATAGTGTCAGAGCTCTCCACCTCCAAAGTGATAGTCTT 1279178 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || ||||| |||||||| || ||||| Sbjct 1279179 TCCAGTCAACGTCTTGACAAAGATCTGCAT 1279208 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| ||||||| || | || |||||||| || ||||| ||||| ||| Sbjct 1278754 CCACCACGGAGCCTTAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 1278813 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| |||||||| || || | || || | |||||||||| || Sbjct 1278814 AAAGTACGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 1278873 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | | | || || | ||| | Sbjct 1278874 ATACCTTCCTTGTCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCAACT 1278933 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| || || | || || || || || ||||| Sbjct 1278934 TCAAGAGTAATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 1278980 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||||||||||| || || || ||||| || Sbjct 2719013 CCACCACGGAGCCTGAGAACAAGATGAAGGGTGGACTCCTTCTGGATATTGTAGTCAGCA 2718954 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || ||| | | ||||||| ||| || || || | || || |||||||||||| || Sbjct 2718953 AGAGTTCTGCCATCCTCCAACTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGA 2718894 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| |||||| || || | | ||| || ||| |||| Sbjct 2718893 ATACCCTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAACTCTCCACC 2718834 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||| ||||| || |||| ||||| || || || ||||| Sbjct 2718833 TCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCAT 2718787 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||| |||||||| || ||||| ||||| ||| Sbjct 2588278 CCACCACGGAGACGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2588337 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| ||||| || || || | || || | |||||||||| || Sbjct 2588338 AAAGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 2588397 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | | | || || | ||| | Sbjct 2588398 ATGCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTATCAATGGTGTCGGAGCTCTCAACT 2588457 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||| ||||| || || || || || || ||||| Sbjct 2588458 TCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTTACGAAGATCTGCAT 2588504 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| |||||||| || ||||| ||||| |||| || | | ||| Sbjct 2719910 AGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGTCCATCC 2719851 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || || | |||||||||| || | ||||||||||| Sbjct 2719850 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCC 2719791 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | || || | ||| ||| | ||| |||||| Sbjct 2719790 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACTTCAAGGGTGATGGTC 2719731 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || || ||||| || || ||||| Sbjct 2719730 TTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 2719699 >seq1 Length=30427671 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | |||||||||||||| ||||| || || || || || | |||| Sbjct 24277064 AGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCGAGTGTGCGACCGTCT 24277123 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | ||||| |||||||| ||| || | |||||||| || Sbjct 24277124 TCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGGATTCCTTCCTTATCC 24277183 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | ||||||| || |||| || ||||| Sbjct 24277184 TGGATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACCTCCAAAGTGATGGTT 24277243 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || |||||||| || ||||| Sbjct 24277244 TTGCCTGTCAAAGTCTTGACAAAAATCTGCAT 24277275 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || ||||| | || | || ||||||||||| ||||| || || || Sbjct 20549531 CCACCACGGAGTCTCAGCACAAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCTGCA 20549472 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| |||||||| ||||| | || |||||||| || ||| || Sbjct 20549471 AGAGTGCGACCATCCTCAAGCTGTTTACCCGCGAATATTAGTCTCTGTTGATCCGGAGGG 20549412 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||| || | | | | ||| || ||| | Sbjct 20549411 ATTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGTACTCTCAACT 20549352 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||| | ||||| | || ||||| ||||| ||||| Sbjct 20549351 TCTAGGGTAATGGTTTAACCGGTAAGGGTCTTGACGAATATCTGCAT 20549305 >seq3 Length=23459830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| || | ||| | || || ||||| || ||||| ||||| || Sbjct 23037364 CCACCACGGAGACGGAGGACGAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCG 23037305 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || |||| || |||||||| || || |||| | || |||||||||| || Sbjct 23037304 AGGGTACGGCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGG 23037245 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | | ||| || || | || Sbjct 23037244 ATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATGGTGTCGGATGATTCAACC 23037185 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | ||| |||||||| || |||| ||||| || || || ||||| || Sbjct 23037184 TCAAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 23037135 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| || ||| || |||| || | ||| ||||| || || ||||| || || ||| Sbjct 3005774 CCACCTCTCAACCTCAGAACCAAGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGCC 3005833 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| |||||||| || ||| | ||||||| |||||||| | || Sbjct 3005834 AAGGTAAGGCCATCCTCGAGCTGTTTACCAGCAAAGATAAGTCGTTGCTGGTCTAAAGGA 3005893 Query 21069 ACGCCTTCCTTGT 21081 | ||||||||||| Sbjct 3005894 ATGCCTTCCTTGT 3005906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422259163976012