Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 5e-12 >seq1 Length=30427671 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| ||||| ||||| ||||||||| || || | || Sbjct 24276822 ATGCAAATCTTTGTGAAAACTTTGACAGGCAAGACCATTACCTTGGAGGTTGAGAGCTCA 24276763 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| || ||| ||||| ||| | | || ||| ||| Sbjct 24276762 GACACAATTGATAATGTCAAAGCTAAGATTCAGGATAAGGAATGGATCCCACCAGACCAA 24276703 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||| |||||||| || ||||| | || ||| | ||| |||| |||||||| Sbjct 24276702 CAGAGACTCATCTTTGCTGGTAAACAGCTCGAGGATGGAAGGACTTTGGCTGATTACAAC 24276643 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || || || |||||||||||| | || || || Sbjct 24276642 ATCCAGAAAGAGTCTACTCTTCACCTTGTATTGCG 24276608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796764953898