Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5 131 3e-25 seq1 125 1e-23 seq4 100 4e-16 seq2 96.9 5e-15 seq3 86.0 9e-12 >seq5 Length=26975502 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || ||||| || || | ||| |||| ||| | Sbjct 6974007 ATGCAAATCTTTGTGAAGACTCTGACGGGTAAAACAATCACCCTTGAGGTTGAGAGCTCA 6973948 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || || ||||||||||| || || ||||| || || Sbjct 6973947 -GACACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGACCA 6973889 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || || || |||||||| |||| || | | ||||| || Sbjct 6973888 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGTCGCACTCTTGCTGATTACAA 6973829 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| ||||| | |||||||| | ||| | |||||||||| Sbjct 6973828 CATCCAAAAAGAGTCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGGTAT 6973778 Score = 129 bits (142), Expect = 9e-25 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || ||||| || ||||| ||||| ||| | ||| |||| ||| Sbjct 772896 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACTATCACTCTCGAGGTTGAGAGCTC- 772838 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || || ||| |||| || || ||||| || || ||||| || || || |||| Sbjct 772837 TGACACCATCGACAATGTTAAGGCA-AAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 772779 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||| | || || || || ||||| |||| ||| | || || || | ||||| | Sbjct 772778 AGCAAAGATTAATATTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACA 772719 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| ||||||||||| | ||||||||| | |||||| |||||||||| Sbjct 772718 ACATTCAGAAAGAATCAACCCTTCATTTGGTTCTCCGTTTAAGAGGTGGTAT 772667 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| || || || ||||| || || | || |||| || | Sbjct 14953516 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTTGAAGTTGAGAGTTCA 14953457 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || || ||||| || ||||| | || || ||||| Sbjct 14953456 -GACACTATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAGTCCCTCCGGATCA 14953398 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || ||||| || ||||| | || ||| |||| || | | |||||| || Sbjct 14953397 ACAGAGACTAATCTTTGCTGGTAAACAGCTTGACGATGGTCGCACTCTTGCAGATTACAA 14953338 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||||||| | || |||||| | | || |||||||||| Sbjct 14953337 CATCCAGAAAGAATCAACTCTCCACTTGGTTCTCAGGTTGAGAGGTGGTAT 14953287 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || ||||| || || | ||| |||| || | Sbjct 772440 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAAACAATCACCCTTGAGGTTGAGAGTTCA 772381 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| || || ||||||||||| || || || || ||||| Sbjct 772380 -GACACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATTCCTCCGGATCA 772322 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || || || | || ||| | || || | | |||||| || Sbjct 772321 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTCGAAGATGGACGCACCCTTGCAGATTACAA 772262 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | ||| | || | ||| | || |||||||| Sbjct 772261 CATCCAAAAGGAGTCGACACTTCATCTTGTGCTTCGTCTCCGTGGTGGTAT 772211 Score = 93.3 bits (102), Expect = 6e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || ||||| || || || || || ||| | ||| |||| ||| Sbjct 6974463 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGCTC- 6974405 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || || ||| |||| || || || || || || ||||| || || ||||| | Sbjct 6974404 TGACACCATCGACAATGTTAAGGCA-AAGATCCAGGACAAGGAAGGCATTCCTCCTGACC 6974346 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||| | || || || || || || |||| ||| | || || || | ||||| | Sbjct 6974345 AGCAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACCTTGGCTGATTACA 6974286 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||||||||||| | || |||||| | | ||| |||||||||| Sbjct 6974285 ACATCCAGAAAGAATCAACACTCCACTTGGTTCTCAGGTTAAGAGGTGGTAT 6974234 >seq1 Length=30427671 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || ||||| || || || ||||| ||||| | ||| || Sbjct 8314939 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTAGAATCATC 8314998 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| ||| || ||||| || ||||| || ||||| ||||| Sbjct 8314999 AGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGATCA 8315058 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || | || || || ||||||||||| || ||| | ||||| ||| ||||| || Sbjct 8315059 GCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTAGCTGATTACAA 8315118 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || ||||| || || | ||||||||| ||||| | |||| ||| Sbjct 8315119 CATCCAGAAAGAGTCGACGCTTCATTTGGTTCTACGTCTGAGAGGAGGT 8315167 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | ||||||||||| || ||| | ||| ||||| | Sbjct 24277275 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 24277216 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || || ||||| ||||| || || || ||||| Sbjct 24277215 GATACTATTGACAATGTTAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAG 24277156 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||| ||||| || || || | || || |||| ||| | | ||||| || Sbjct 24277155 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGACGGTCGCACACTCGCTGATTACAAC 24277096 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || | |||||||| | ||| | |||||||||| Sbjct 24277095 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGTAT 24277046 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| || || |||||||| || || |||| |||| ||| Sbjct 20549761 ATGCAGATTTTCGTGAAGACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAGAGCTC- 20549819 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || || ||||| || |||||||| || ||||| || || Sbjct 20549820 TGATACAATCGATAACCTGAAGGCCAAGATTCAGGACAAAGAAGGGATCCCACCAGACCA 20549879 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || ||||||||||| || | || ||| |||| || | | |||||| || Sbjct 20549880 ACAGAGACTCATCTTTGCAGGAAAGCAGCTCGAAGATGGTCGGACTCTTGCAGATTACAA 20549939 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || | || | ||| | || ||||| || Sbjct 20549940 CATCCAAAAGGAGTCAACACTTCACCTTGTGCTGCGTCTTCGTGGTGGGAT 20549990 Score = 100 bits (110), Expect = 4e-16 Identities = 100/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 ||||| || || ||||| || ||||||||||||||||| ||| | || ||||| || || Sbjct 11218928 GAAAA--CAGGACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAA 11218871 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 || | || ||| || ||||||||| ||||| || ||||| |||||||| ||| | || Sbjct 11218870 GCAGCTTGAAGATGGTAGAACATTAGCGGATTACAACATTCAGAAAGAATCGACTCTTCA 11218811 Query 124742 TTTGGTTTT 124750 ||||| || Sbjct 11218810 CTTGGTATT 11218802 >seq4 Length=18585056 Score = 100 bits (110), Expect = 4e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || ||| | ||||| || || || || ||||| || | ||| | ||| Sbjct 1279669 TACAGATGCAGATCTTTGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAA 1279610 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 ||| || || || | || || || || ||||| ||||| || || || | Sbjct 1279609 GCTCTGACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGG 1279550 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 |||| || ||||||||||| || |||||||| |||||||| | || || || | |||| Sbjct 1279549 ATCAGCAGAGGCTTATTTTCGCCGGAAAACAGCTAGAGGATGGCCGTACGTTGGCTGATT 1279490 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| || || ||||| || | || |||||| | | | || |||||||| Sbjct 1279489 ACAATATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGGTAT 1279435 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | ||||| || || || || ||||| ||| | ||| | || ||| Sbjct 2719471 ATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACTATCACTTTGGAGGTAGAGAGCTC- 2719529 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || || || ||||| ||||| || || || || || Sbjct 2719530 TGACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCTCCGGACCA 2719589 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| ||||||||||| |||||| |||| || || | ||||| || Sbjct 2719590 GCAGAGGTTGATCTTTGCCGGAAAACAATTGGAGGATGGTCGTACTTTGGCGGATTACAA 2719649 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || ||||| || ||| | || || ||||| Sbjct 2719650 CATCCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGTCTGCGTGGAGGTAT 2719700 Score = 86.0 bits (94), Expect = 9e-12 Identities = 170/248 (69%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542 |||| ||||| ||||| || | ||||||||| ||||| | |||||||||||||||| | Sbjct 16511593 GCAATGTTAAACGGTACGCCGAGACCCATATCGGCTGAACGCTGATACATTTGACATGAA 16511652 Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602 || | | ||| | |||| ||| ||| |||| || || || || | |||| Sbjct 16511653 AGTTCTCCATTTGCA---ACATAAAACTGTGCAAACATGTGGCATGGAGGAAGTGCCATC 16511709 Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTC-TAGAT--TCAGGttta 205659 | || ||| ||||||||| |||| | |||||| | | | ||| ||||| || Sbjct 16511710 AGCTTAAGATCAGAAGGATTCCAAGCTG---ACATTATAATCCGTCGATCATCAGGATTG 16511766 Query 205660 ttttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTA 205719 || || || || || || | || | | |||||||||||||| ||||||| | | Sbjct 16511767 TTCTTGATCTTGTTAATTACATCTAAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCA 16511826 Query 205720 TCCATATC 205727 | |||||| Sbjct 16511827 TGCATATC 16511834 >seq2 Length=19698289 Score = 96.9 bits (106), Expect = 5e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || ||||| || ||||||||||||||||| ||||| |||||||| || || |||| Sbjct 14981387 TTCAGGACAAAGAGGGCATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAAT 14981446 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 | || ||| | || || |||| ||||| || || || ||||| || ||| | ||| Sbjct 14981447 TGGAAGATGGCCGGACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCAT 14981502 >seq3 Length=23459830 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| ||| | |||| || || || || || ||||| | ||| | || || | Sbjct 3005772 ATGCAAATCTTTGTGCAGACTCTTACGGGAAAGACCATAACCCTTGAGGTCAAAAGCTCA 3005713 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || || || |||||||||||||| || | ||| || Sbjct 3005712 -GACACTATCGATAACGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCTTCCTCGCCA 3005654 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || ||||| |||||||| || ||| | |||||| |||| || | | ||||| || Sbjct 3005653 GCAGAGACTTATCTTTGCAGGTAAGCAACTCGAGGATGGTCGTACTCTTGCCGATTACAA 3005594 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| ||||| ||||| | || | ||| | | |||||||| Sbjct 3005593 CATCCAGAAAGAGTCAACACTGCATCTTGTCCTTCGTCTTTGCGGTGGTAT 3005543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455933897600