Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq5 131 3e-25
seq1 125 1e-23
seq4 100 4e-16
seq2 96.9 5e-15
seq3 86.0 9e-12
>seq5
Length=26975502
Score = 131 bits (144), Expect = 3e-25
Identities = 169/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| ||| | ||||| || || || ||||| || || | ||| |||| ||| |
Sbjct 6974007 ATGCAAATCTTTGTGAAGACTCTGACGGGTAAAACAATCACCCTTGAGGTTGAGAGCTCA 6973948
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| ||| | ||| || || ||||||||||| || || ||||| || ||
Sbjct 6973947 -GACACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATCCCACCGGACCA 6973889
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| |||||||| ||||| || || || |||||||| |||| || | | ||||| ||
Sbjct 6973888 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGTCGCACTCTTGCTGATTACAA 6973829
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| |||||||| ||||| | |||||||| | ||| | ||||||||||
Sbjct 6973828 CATCCAAAAAGAGTCAACCCTTCATTTGGTGCTTCGTCTGAGAGGTGGTAT 6973778
Score = 129 bits (142), Expect = 9e-25
Identities = 171/232 (74%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| || | || ||||| || ||||| ||||| ||| | ||| |||| |||
Sbjct 772896 ATGCAAATCTTCGTGAAAACACTCACTGGCAAGACTATCACTCTCGAGGTTGAGAGCTC- 772838
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
||| || || ||| |||| || || ||||| || || ||||| || || || ||||
Sbjct 772837 TGACACCATCGACAATGTTAAGGCA-AAGATTCAGGACAAGGAAGGCATTCCTCCGGATC 772779
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| ||||| | || || || || ||||| |||| ||| | || || || | ||||| |
Sbjct 772778 AGCAAAGATTAATATTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCCGATTACA 772719
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| ||||| ||||||||||| | ||||||||| | |||||| ||||||||||
Sbjct 772718 ACATTCAGAAAGAATCAACCCTTCATTTGGTTCTCCGTTTAAGAGGTGGTAT 772667
Score = 107 bits (118), Expect = 3e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| |||||| | ||||| || || || ||||| || || | || |||| || |
Sbjct 14953516 ATGCAGATATTTGTCAAGACGCTTACCGGTAAAACCATTACCCTTGAAGTTGAGAGTTCA 14953457
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| ||| | ||| || || ||||| || ||||| | || || |||||
Sbjct 14953456 -GACACTATTGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGAGTCCCTCCGGATCA 14953398
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| || || || ||||| || ||||| | || ||| |||| || | | |||||| ||
Sbjct 14953397 ACAGAGACTAATCTTTGCTGGTAAACAGCTTGACGATGGTCGCACTCTTGCAGATTACAA 14953338
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || |||||||||||| | || |||||| | | || ||||||||||
Sbjct 14953337 CATCCAGAAAGAATCAACTCTCCACTTGGTTCTCAGGTTGAGAGGTGGTAT 14953287
Score = 98.7 bits (108), Expect = 2e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| ||| | ||||| || || || ||||| || || | ||| |||| || |
Sbjct 772440 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAAACAATCACCCTTGAGGTTGAGAGTTCA 772381
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| ||| | ||| || || ||||||||||| || || || || |||||
Sbjct 772380 -GACACCATTGACAATGTCAAAGCTAAGATCCAAGATAAAGAGGGAATTCCTCCGGATCA 772322
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| |||||||| ||||| || || || | || ||| | || || | | |||||| ||
Sbjct 772321 GCAGAGGCTTATCTTTGCCGGTAAGCAGCTCGAAGATGGACGCACCCTTGCAGATTACAA 772262
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || || || | ||| | || | ||| | || ||||||||
Sbjct 772261 CATCCAAAAGGAGTCGACACTTCATCTTGTGCTTCGTCTCCGTGGTGGTAT 772211
Score = 93.3 bits (102), Expect = 6e-14
Identities = 163/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| || | || ||||| || || || || || ||| | ||| |||| |||
Sbjct 6974463 ATGCAAATTTTCGTGAAAACACTCACTGGTAAGACCATCACTCTCGAGGTTGAGAGCTC- 6974405
Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656
||| || || ||| |||| || || || || || || ||||| || || ||||| |
Sbjct 6974404 TGACACCATCGACAATGTTAAGGCA-AAGATCCAGGACAAGGAAGGCATTCCTCCTGACC 6974346
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| ||||| | || || || || || || |||| ||| | || || || | ||||| |
Sbjct 6974345 AGCAAAGATTGATCTTCGCTGGTAAGCAGCTAGAAGATGGCCGCACCTTGGCTGATTACA 6974286
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| || || ||||||||||| | || |||||| | | ||| ||||||||||
Sbjct 6974285 ACATCCAGAAAGAATCAACACTCCACTTGGTTCTCAGGTTAAGAGGTGGTAT 6974234
>seq1
Length=30427671
Score = 125 bits (138), Expect = 1e-23
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || || | || || ||||| || || || ||||| ||||| | ||| ||
Sbjct 8314939 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCTTAGAGGTAGAATCATC 8314998
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| ||||| ||| | ||| ||| || ||||| || ||||| || ||||| |||||
Sbjct 8314999 AGACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGAATCCCACCGGATCA 8315058
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| || | || || || ||||||||||| || ||| | ||||| ||| ||||| ||
Sbjct 8315059 GCAACGGTTGATCTTCGCCGGAAAACAATTGGAAGATGGAAGAACACTAGCTGATTACAA 8315118
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|| || ||||| || || | ||||||||| ||||| | |||| |||
Sbjct 8315119 CATCCAGAAAGAGTCGACGCTTCATTTGGTTCTACGTCTGAGAGGAGGT 8315167
Score = 113 bits (124), Expect = 7e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| | ||||||||||| || ||| | ||| ||||| |
Sbjct 24277275 ATGCAGATTTTTGTCAAGACTTTGACAGGCAAAACCATCACTTTGGAGGTTGAAAGTTCT 24277216
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| | || || || || ||||| ||||| || || || |||||
Sbjct 24277215 GATACTATTGACAATGTTAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAG 24277156
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| |||||||| ||||| || || || | || || |||| ||| | | ||||| ||
Sbjct 24277155 CAGAGGCTTATCTTTGCCGGTAAGCAGCTTGAAGACGGTCGCACACTCGCTGATTACAAC 24277096
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || || || | |||||||| | ||| | ||||||||||
Sbjct 24277095 ATCCAAAAGGAGTCCACCCTCCATTTGGTGCTTCGTCTCAGAGGTGGTAT 24277046
Score = 104 bits (114), Expect = 4e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || || | ||||| || || |||||||| || || |||| |||| |||
Sbjct 20549761 ATGCAGATTTTCGTGAAGACCCTTACCGGCAAAACCATTACCCTAGAAGTTGAGAGCTC- 20549819
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | || || ||||| || |||||||| || ||||| || ||
Sbjct 20549820 TGATACAATCGATAACCTGAAGGCCAAGATTCAGGACAAAGAAGGGATCCCACCAGACCA 20549879
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| || || || ||||||||||| || | || ||| |||| || | | |||||| ||
Sbjct 20549880 ACAGAGACTCATCTTTGCAGGAAAGCAGCTCGAAGATGGTCGGACTCTTGCAGATTACAA 20549939
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || ||||| | || | || | ||| | || ||||| ||
Sbjct 20549940 CATCCAAAAGGAGTCAACACTTCACCTTGTGCTGCGTCTTCGTGGTGGGAT 20549990
Score = 100 bits (110), Expect = 4e-16
Identities = 100/129 (78%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681
||||| || || ||||| || ||||||||||||||||| ||| | || ||||| || ||
Sbjct 11218928 GAAAA--CAGGACAAAGAGGGAATACCACCTGATCAACAGAGGTTGATATTTGCTGGTAA 11218871
Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741
|| | || ||| || ||||||||| ||||| || ||||| |||||||| ||| | ||
Sbjct 11218870 GCAGCTTGAAGATGGTAGAACATTAGCGGATTACAACATTCAGAAAGAATCGACTCTTCA 11218811
Query 124742 TTTGGTTTT 124750
||||| ||
Sbjct 11218810 CTTGGTATT 11218802
>seq4
Length=18585056
Score = 100 bits (110), Expect = 4e-16
Identities = 164/235 (70%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593
|||| ||||| || ||| | ||||| || || || || ||||| || | ||| | |||
Sbjct 1279669 TACAGATGCAGATCTTTGTTAAGACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAA 1279610
Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653
||| || || || | || || || || ||||| ||||| || || || |
Sbjct 1279609 GCTCTGACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCGG 1279550
Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713
|||| || ||||||||||| || |||||||| |||||||| | || || || | ||||
Sbjct 1279549 ATCAGCAGAGGCTTATTTTCGCCGGAAAACAGCTAGAGGATGGCCGTACGTTGGCTGATT 1279490
Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| ||||| || || ||||| || | || |||||| | | | || ||||||||
Sbjct 1279489 ACAATATCCAGAAGGAATCCACCCTCCACTTGGTTCTCAGGCTCCGTGGTGGTAT 1279435
Score = 95.1 bits (104), Expect = 2e-14
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
||||| || || | ||||| || || || || ||||| ||| | ||| | || |||
Sbjct 2719471 ATGCAGATCTTCGTGAAGACTCTCACCGGAAAGACTATCACTTTGGAGGTAGAGAGCTC- 2719529
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || ||| || | || || || || ||||| ||||| || || || || ||
Sbjct 2719530 TGACACCATTGACAACGTGAAGGCCAAGATCCAGGATAAGGAAGGAATCCCTCCGGACCA 2719589
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||| | || ||||| ||||||||||| |||||| |||| || || | ||||| ||
Sbjct 2719590 GCAGAGGTTGATCTTTGCCGGAAAACAATTGGAGGATGGTCGTACTTTGGCGGATTACAA 2719649
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || || || || | || ||||| || ||| | || || |||||
Sbjct 2719650 CATCCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGTCTGCGTGGAGGTAT 2719700
Score = 86.0 bits (94), Expect = 9e-12
Identities = 170/248 (69%), Gaps = 9/248 (4%)
Strand=Plus/Plus
Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTA 205542
|||| ||||| ||||| || | ||||||||| ||||| | |||||||||||||||| |
Sbjct 16511593 GCAATGTTAAACGGTACGCCGAGACCCATATCGGCTGAACGCTGATACATTTGACATGAA 16511652
Query 205543 AGATATTTATTATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATA 205602
|| | | ||| | |||| ||| ||| |||| || || || || | ||||
Sbjct 16511653 AGTTCTCCATTTGCA---ACATAAAACTGTGCAAACATGTGGCATGGAGGAAGTGCCATC 16511709
Query 205603 TTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTC-TAGAT--TCAGGttta 205659
| || ||| ||||||||| |||| | |||||| | | | ||| ||||| ||
Sbjct 16511710 AGCTTAAGATCAGAAGGATTCCAAGCTG---ACATTATAATCCGTCGATCATCAGGATTG 16511766
Query 205660 ttttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTA 205719
|| || || || || || | || | | |||||||||||||| ||||||| | |
Sbjct 16511767 TTCTTGATCTTGTTAATTACATCTAAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCA 16511826
Query 205720 TCCATATC 205727
| ||||||
Sbjct 16511827 TGCATATC 16511834
>seq2
Length=19698289
Score = 96.9 bits (106), Expect = 5e-15
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686
|||| || ||||| || ||||||||||||||||| ||||| |||||||| || || ||||
Sbjct 14981387 TTCAGGACAAAGAGGGCATACCACCTGATCAACAGAGGCTGATTTTTGCTGGTAAGCAAT 14981446
Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
| || ||| | || || |||| ||||| || || || ||||| || ||| | |||
Sbjct 14981447 TGGAAGATGGCCGGACCTTAGCTGATTACAACATCCAGAAAGAGTCTACTCTTCAT 14981502
>seq3
Length=23459830
Score = 86.0 bits (94), Expect = 9e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597
|||||||| ||| | |||| || || || || || ||||| | ||| | || || |
Sbjct 3005772 ATGCAAATCTTTGTGCAGACTCTTACGGGAAAGACCATAACCCTTGAGGTCAAAAGCTCA 3005713
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || || ||| | || || || |||||||||||||| || | ||| ||
Sbjct 3005712 -GACACTATCGATAACGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCTTCCTCGCCA 3005654
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| || ||||| |||||||| || ||| | |||||| |||| || | | ||||| ||
Sbjct 3005653 GCAGAGACTTATCTTTGCAGGTAAGCAACTCGAGGATGGTCGTACTCTTGCCGATTACAA 3005594
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || ||||| ||||| ||||| | || | ||| | | ||||||||
Sbjct 3005593 CATCCAGAAAGAGTCAACACTGCATCTTGTCCTTCGTCTTTGCGGTGGTAT 3005543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755455933897600
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