Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 5e-15 seq1 95.1 2e-14 seq5 93.3 6e-14 >seq3 Length=23459830 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 10409 AACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGA 10468 ||| ||| ||| ||| | |||| ||||| ||| || ||| | || || ||||||| Sbjct 17288658 AACGGATCTAAGTATCGCTGTTCCCGAAGGAACTTACGCGAGAATTGCGCCGAGATCTGG 17288599 Query 10469 TTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGG 10528 ||| ||| || | | |||||| |||| ||||| || ||||| | ||||||||||| Sbjct 17288598 TTTGGCTTGGAAACATTCGATTGATGTTGGTGCTGGTGTGATTGATGCTGATTATAGAGG 17288539 Query 10529 AAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTT 10571 | ||| || || || || |||||||||||| ||| |||||| Sbjct 17288538 ACCTGTTGGTGTGATTTTGTTTAATCATTCTGATGCTGATTTT 17288496 >seq1 Length=30427671 Score = 95.1 bits (104), Expect = 2e-14 Identities = 156/233 (67%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || | || |||||||| | || || ||||| || || ||||| | Sbjct 8315166 CCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGCT 8315107 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || ||||||||||| || || ||||| | |||||||||||| || Sbjct 8315106 AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 8315047 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| || ||||| |||||| Sbjct 8315046 ATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTACC 8314987 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 |||| || ||||| || || |||| ||||| | ||| || |||||||| || Sbjct 8314986 TCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTTCTT 8314934 >seq5 Length=26975502 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || | ||| |||||||| || || ||||||| | Sbjct 14953290 CCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCA 14953349 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||||| |||||||| || | ||| || ||||||||||| Sbjct 14953350 AGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 14953409 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 | |||||| || ||||| ||| |||||||| || ||| Sbjct 14953410 ACTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACT 14953469 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| || | || || | ||||| ||||| Sbjct 14953470 TCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743526334941440