Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq5 192 5e-44 seq3 98.7 9e-16 >seq5 Length=26975502 Score = 192 bits (212), Expect = 5e-44 Identities = 570/870 (66%), Gaps = 22/870 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||| ||||| |||| ||||||||| ||||| || || || || || Sbjct 16409101 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCC 16409042 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | | ||||| |||||| ||||||||||||| | || ||| ||| | || Sbjct 16409041 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTAGTCACACCATACACCTTACCACA- 16408983 Query 16049 CCCAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| || | || || ||||| || || || || || ||||| |||| || |||| Sbjct 16408982 CCCAAGCGCAGCCAACAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACG 16408923 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 ||||| || | || | || | || || | ||| | | | || || | ||| Sbjct 16408922 ATTCATCCCAACCAAGGCACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAAC 16408863 Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTT------AACGGAGGGTTTAATAAGTG 16221 || ||| | || | ||| | | || || | ||| || | ||| ||| Sbjct 16408862 AGCATCACAAACAAT--CGCTTTCAA-ACGATCTTCATCAAACTTAGT-TCTAAGAAGAC 16408807 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 | || | | | |||||| |||||||| || | |||||||| || || || ||||| Sbjct 16408806 TATATA--TCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTT 16408749 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 |||||| || || || ||||||| |||||||| || | ||| ||||| | ||| Sbjct 16408748 TGAAAAAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCT 16408689 Query 16342 ACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCT 16401 ||| || ||||||||||||||||| ||||| || || | || |||| || | || Sbjct 16408688 ACCGGAGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTTTG 16408629 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 | | | | |||||||| ||||||| | ||||||| || |||| ||| | Sbjct 16408628 AGAT---CCGTTGATCCATTTCATAGCCCATTCTGCTTTT--TTCGTCACAAGGAATGGT 16408574 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 || |||||| ||| | || || | | |||||| | ||| ||||| || || | || Sbjct 16408573 TTCGATTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAG 16408514 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581 | ||||||||| || || ||||||||||| || || || || || || || ||| | Sbjct 16408513 GAGACTATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACG 16408454 Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641 |||||| || || || || || || || || || | || ||| ||| ||||| Sbjct 16408453 AGCTTCTGAGATCTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCC 16408394 Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701 || || || || || || || | ||||||||| || | ||||| | | || Sbjct 16408393 GTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAG 16408334 Query 16702 T---TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758 | ||| |||||| | |||| || | |||||| ||||| | ||||| || || Sbjct 16408333 TGAGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGA 16408274 Query 16759 AGCAACAGCCTTTTTATACATTTTCCATAT 16788 || | || || || ||||| | ||| || Sbjct 16408273 TGCTTCGGCTTTCTTGTACATCTCCCAAAT 16408244 >seq3 Length=23459830 Score = 98.7 bits (108), Expect = 9e-16 Identities = 294/447 (66%), Gaps = 20/447 (4%) Strand=Plus/Plus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || ||||| || |||| ||| | || || |||||||| ||||| ||| Sbjct 9980032 GACATAACGGAAGCCTTTTGGTAATCACCAACACGTTTCTCGAAGAAATTCGTTTTCCCT 9980091 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | | ||||||| |||||| |||| || ||||| | || || || || | Sbjct 9980092 TGAAGTGAAATAAGTTCCATCCAATCGAACGGATTAGTAACACCGTACACCTTCCCGTA- 9980150 Query 16049 CCCAATTCCAACAATAATC-TATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| || | | || | ||||||| ||||| || |||||||| |||| ||||||| Sbjct 9980151 CCCAAGCGCACCCAAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACG 9980210 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167 |||||| || | || || | || || | ||| | | | || || | || Sbjct 9980211 GTTCATCCCAACCAACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGAC 9980270 Query 16168 CGCTTCA---ATGATT-ATATCTCT--TACTACACTA---TTTAACGGAGGGTTTAATAA 16218 ||| || | |||| || || | | || | ||| ||| | ||| | | Sbjct 9980271 CGCGTCGCAGACGATTGATTTCACGCGTTCTTCGCTAAGCTTT-------GTTTTGAGTA 9980323 Query 16219 GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278 | || || | || |||||| |||||||| || || |||||||| | || || || Sbjct 9980324 GCGTGTAGAG--TAGACAAGCGAAATCACAGTGTAAACCTTCGTCACGTGAGATCAATTC 9980381 Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAA 16338 |||||| ||||| | || ||||| ||||||||||| || | ||| || || | ||| Sbjct 9980382 GTTTGAGAATGTTAATCCAGGCATGAGTCCTCGTTTCTTCAGCCAGAAGATTGAACAAAA 9980441 Query 16339 TGAACCAGAAAAGAATATACCTTCAAC 16365 || || ||||| ||||||||||| Sbjct 9980442 GCTTCCGGAGAAGAAGATACCTTCAAC 9980468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511959530200