Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq5 192 5e-44
seq3 98.7 9e-16
>seq5
Length=26975502
Score = 192 bits (212), Expect = 5e-44
Identities = 570/870 (66%), Gaps = 22/870 (3%)
Strand=Plus/Minus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || ||| ||||| |||| ||||||||| ||||| || || || || ||
Sbjct 16409101 GACATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCC 16409042
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048
| | ||||| |||||| ||||||||||||| | || ||| ||| | ||
Sbjct 16409041 TGAAGCGAAATCAATTCCATCCAATCAAAAGGATTAGTCACACCATACACCTTACCACA- 16408983
Query 16049 CCCAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107
||||| || | || || ||||| || || || || || ||||| |||| || ||||
Sbjct 16408982 CCCAAGCGCAGCCAACAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACG 16408923
Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167
||||| || | || | || | || || | ||| | | | || || | |||
Sbjct 16408922 ATTCATCCCAACCAAGGCACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAAC 16408863
Query 16168 CGCTTCAATGATTATATCTCTTACTACACTATTT------AACGGAGGGTTTAATAAGTG 16221
|| ||| | || | ||| | | || || | ||| || | ||| |||
Sbjct 16408862 AGCATCACAAACAAT--CGCTTTCAA-ACGATCTTCATCAAACTTAGT-TCTAAGAAGAC 16408807
Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281
| || | | | |||||| |||||||| || | |||||||| || || || |||||
Sbjct 16408806 TATATA--TCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTT 16408749
Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341
|||||| || || || ||||||| |||||||| || | ||| ||||| | |||
Sbjct 16408748 TGAAAAAGTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCT 16408689
Query 16342 ACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCT 16401
||| || ||||||||||||||||| ||||| || || | || |||| || | ||
Sbjct 16408688 ACCGGAGAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTTTG 16408629
Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461
| | | | |||||||| ||||||| | ||||||| || |||| ||| |
Sbjct 16408628 AGAT---CCGTTGATCCATTTCATAGCCCATTCTGCTTTT--TTCGTCACAAGGAATGGT 16408574
Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521
|| |||||| ||| | || || | | |||||| | ||| ||||| || || | ||
Sbjct 16408573 TTCGATTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAG 16408514
Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCT 16581
| ||||||||| || || ||||||||||| || || || || || || || ||| |
Sbjct 16408513 GAGACTATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACG 16408454
Query 16582 AGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCC 16641
|||||| || || || || || || || || || | || ||| ||| |||||
Sbjct 16408453 AGCTTCTGAGATCTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCC 16408394
Query 16642 ATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAG 16701
|| || || || || || || | ||||||||| || | ||||| | | ||
Sbjct 16408393 GTCTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAG 16408334
Query 16702 T---TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGA 16758
| ||| |||||| | |||| || | |||||| ||||| | ||||| || ||
Sbjct 16408333 TGAGTTTTCCCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGA 16408274
Query 16759 AGCAACAGCCTTTTTATACATTTTCCATAT 16788
|| | || || || ||||| | ||| ||
Sbjct 16408273 TGCTTCGGCTTTCTTGTACATCTCCCAAAT 16408244
>seq3
Length=23459830
Score = 98.7 bits (108), Expect = 9e-16
Identities = 294/447 (66%), Gaps = 20/447 (4%)
Strand=Plus/Plus
Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988
|||||||| || ||||| || |||| ||| | || || |||||||| ||||| |||
Sbjct 9980032 GACATAACGGAAGCCTTTTGGTAATCACCAACACGTTTCTCGAAGAAATTCGTTTTCCCT 9980091
Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048
| | ||||||| |||||| |||| || ||||| | || || || || |
Sbjct 9980092 TGAAGTGAAATAAGTTCCATCCAATCGAACGGATTAGTAACACCGTACACCTTCCCGTA- 9980150
Query 16049 CCCAATTCCAACAATAATC-TATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107
||||| || | | || | ||||||| ||||| || |||||||| |||| |||||||
Sbjct 9980151 CCCAAGCGCACCCAAAAGCCTATCCGCAACAAACTCAATATACTGACTCATCAAATCACG 9980210
Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAAC 16167
|||||| || | || || | || || | ||| | | | || || | ||
Sbjct 9980211 GTTCATCCCAACCAACGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATTTCGAC 9980270
Query 16168 CGCTTCA---ATGATT-ATATCTCT--TACTACACTA---TTTAACGGAGGGTTTAATAA 16218
||| || | |||| || || | | || | ||| ||| | ||| | |
Sbjct 9980271 CGCGTCGCAGACGATTGATTTCACGCGTTCTTCGCTAAGCTTT-------GTTTTGAGTA 9980323
Query 16219 GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTC 16278
| || || | || |||||| |||||||| || || |||||||| | || || ||
Sbjct 9980324 GCGTGTAGAG--TAGACAAGCGAAATCACAGTGTAAACCTTCGTCACGTGAGATCAATTC 9980381
Query 16279 GTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAA 16338
|||||| ||||| | || ||||| ||||||||||| || | ||| || || | |||
Sbjct 9980382 GTTTGAGAATGTTAATCCAGGCATGAGTCCTCGTTTCTTCAGCCAGAAGATTGAACAAAA 9980441
Query 16339 TGAACCAGAAAAGAATATACCTTCAAC 16365
|| || ||||| |||||||||||
Sbjct 9980442 GCTTCCGGAGAAGAAGATACCTTCAAC 9980468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462511959530200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |