Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq5 185 8e-42
seq3 86.0 6e-12
>seq5
Length=26975502
Score = 185 bits (204), Expect = 8e-42
Identities = 567/861 (66%), Gaps = 32/861 (4%)
Strand=Plus/Minus
Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971
||| ||||| |||| |||||| || ||||| ||||| || ||||| | || || ||
Sbjct 16409087 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCCTGAAGCGAAATCAA 16409028
Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030
|||||| ||||||| ||||| || ||| | |||| ||| |||| || || | |
Sbjct 16409027 TTCCATCCAATCAAAAGGATTAGTC-ACACCATACACCTTACCACACCCAAGCGCAGCCA 16408969
Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090
|| ||||| |||| ||||||||| || ||| ||| || |||| |||||| || | |
Sbjct 16408968 ACAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGATTCATCCCAACCA 16408909
Query 14091 GTTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149
||| ||| | || ||| ||| | || || ||||| || |
Sbjct 16408908 AGGC-ACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAACAGCATCACA---A 16408853
Query 14150 ATAATCGT-----AATAAT-TTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 14203
| ||||| || || ||||| | | || | | ||| | || | || |||
Sbjct 16408852 ACAATCGCTTTCAAACGATCTTCATCAAACTTAGT---TCTAAGAAGACTATATATCAAA 16408796
Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263
|| || |||||||| ||||| || || ||||| ||| | |||||||||||| || | |
Sbjct 16408795 CAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGT 16408736
Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 14322
|| ||||| || |||||||| || ||||| ||||| | | | || | | ||||| |||||
Sbjct 16408735 CCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGAGAAGAA 16408677
Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382
||| || ||||| ||||||||||| | ||||| | ||| ||||| | ||
Sbjct 16408676 TATACCTTCAACGCAAGCAAACGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGT 16408621
Query 14383 T-ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14441
| |||||||| |||||||||| | |||||| | | || || ||||| || |||
Sbjct 16408620 TGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATTGCAC 16408563
Query 14442 TAAATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499
||| | ||| || |||||| | || ||| || || || || | ||| | |||||
Sbjct 16408562 GAAAAAGATGATCTCTCTCTTTGTTGTCTTTG--ATATACGTGTCGAGAAGGAGACTATA 16408505
Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559
||| || ||||| || || || || || || || || || || || | |||||||||
Sbjct 16408504 CATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 16408445
Query 14560 CCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619
|| || || || ||||| | | ||| || ||| || || || ||
Sbjct 16408444 GATCTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGC 16408385
Query 14620 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT---TTTTT 14676
|| || || || | | || |||||| |||| | || || ||| | ||| ||||
Sbjct 16408384 GGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTC 16408325
Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736
||| ||| || | ||| ||||| ||||| || ||||||| || || | ||
Sbjct 16408324 CCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGC 16408265
Query 14737 TTTTTTATACATTACCCATAT 14757
||| || ||||| |||| ||
Sbjct 16408264 TTTCTTGTACATCTCCCAAAT 16408244
>seq3
Length=23459830
Score = 86.0 bits (94), Expect = 6e-12
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443
|||||||| ||||||||| || ||| || | || ||||||||||| ||| |
Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662
Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503
|| | ||| || ||||||| || | || || ||||| | ||| | ||||||||
Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722
Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA 14545
|| ||||| |||||||| || || ||||| ||||| || |||
Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAA 9980764
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482345557794760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |