Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5 185 8e-42 seq3 86.0 6e-12 >seq5 Length=26975502 Score = 185 bits (204), Expect = 8e-42 Identities = 567/861 (66%), Gaps = 32/861 (4%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| ||||| |||| |||||| || ||||| ||||| || ||||| | || || || Sbjct 16409087 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCCTGAAGCGAAATCAA 16409028 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 14030 |||||| ||||||| ||||| || ||| | |||| ||| |||| || || | | Sbjct 16409027 TTCCATCCAATCAAAAGGATTAGTC-ACACCATACACCTTACCACACCCAAGCGCAGCCA 16408969 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 || ||||| |||| ||||||||| || ||| ||| || |||| |||||| || | | Sbjct 16408968 ACAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGATTCATCCCAACCA 16408909 Query 14091 GTTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATA 14149 ||| ||| | || ||| ||| | || || ||||| || | Sbjct 16408908 AGGC-ACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAACAGCATCACA---A 16408853 Query 14150 ATAATCGT-----AATAAT-TTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAA 14203 | ||||| || || ||||| | | || | | ||| | || | || ||| Sbjct 16408852 ACAATCGCTTTCAAACGATCTTCATCAAACTTAGT---TCTAAGAAGACTATATATCAAA 16408796 Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || || |||||||| ||||| || || ||||| ||| | |||||||||||| || | | Sbjct 16408795 CAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGT 16408736 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 14322 || ||||| || |||||||| || ||||| ||||| | | | || | | ||||| ||||| Sbjct 16408735 CCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGAGAAGAA 16408677 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 ||| || ||||| ||||||||||| | ||||| | ||| ||||| | || Sbjct 16408676 TATACCTTCAACGCAAGCAAACGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGT 16408621 Query 14383 T-ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14441 | |||||||| |||||||||| | |||||| | | || || ||||| || ||| Sbjct 16408620 TGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATTGCAC 16408563 Query 14442 TAAATAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 ||| | ||| || |||||| | || ||| || || || || | ||| | ||||| Sbjct 16408562 GAAAAAGATGATCTCTCTCTTTGTTGTCTTTG--ATATACGTGTCGAGAAGGAGACTATA 16408505 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559 ||| || ||||| || || || || || || || || || || || | ||||||||| Sbjct 16408504 CATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 16408445 Query 14560 CCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 || || || || ||||| | | ||| || ||| || || || || Sbjct 16408444 GATCTGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGC 16408385 Query 14620 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT---TTTTT 14676 || || || || | | || |||||| |||| | || || ||| | ||| |||| Sbjct 16408384 GGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTC 16408325 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 ||| ||| || | ||| ||||| ||||| || ||||||| || || | || Sbjct 16408324 CCAGTCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGC 16408265 Query 14737 TTTTTTATACATTACCCATAT 14757 ||| || ||||| |||| || Sbjct 16408264 TTTCTTGTACATCTCCCAAAT 16408244 >seq3 Length=23459830 Score = 86.0 bits (94), Expect = 6e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 |||||||| ||||||||| || ||| || | || ||||||||||| ||| | Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662 Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 || | ||| || ||||||| || | || || ||||| | ||| | |||||||| Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAA 14545 || ||||| |||||||| || || ||||| ||||| || ||| Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAA 9980764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345557794760