Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq5 95.1 9e-15
>seq5
Length=26975502
Score = 95.1 bits (104), Expect = 9e-15
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| ||||| || || || ||||||||||||||||| || | ||| | | ||
Sbjct 772456 AAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTTCTTCCGTC 772515
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||| | || || || ||| |||||||||| || |||||| || | |||||||| ||
Sbjct 772516 TTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCCTTGTC 772575
Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291
|| | |||| ||||| | ||| ||||||| | ||| || | || |||
Sbjct 772576 CTGGATCT-TTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATGG 772634
Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| ||||| |||| || || ||||| ||||||||
Sbjct 772635 TCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668
Score = 95.1 bits (104), Expect = 9e-15
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170
|| || |||| ||| || ||||||||||| || |||||||| || || | || || |
Sbjct 14953302 CTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCAAGAGTGCGACCA 14953361
Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230
|| || | ||||| || ||| |||| ||||| ||||||||| || || ||||||||
Sbjct 14953362 TCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGGACTCCTTCCTTG 14953421
Query 18231 TCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289
|| || | | |||| | | || ||| |||||| ||| ||||| ||| ||
Sbjct 14953422 TCTTGGATCT-TAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCAAGGGTAAT 14953480
Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| |||| ||||| | || || ||||| || |||||
Sbjct 14953481 GGTTTTACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||||| ||||||||||| ||||||||||| ||||||| || | ||||
Sbjct 772685 AGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCT 772744
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | ||||| || || | || | |||||| |||||| || | ||||||||| ||
Sbjct 772745 TCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCC 772804
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
||| | | ||| || | | | |||||| | ||| || | ||||| |
Sbjct 772805 TGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATAGTC 772864
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| || | |||||| || || ||||||||
Sbjct 772865 TTGCCAGTGAGTGTTTTCACGAAGATTTGCAT 772896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379343967637215
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |