Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 9e-15 >seq5 Length=26975502 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||||| || || || ||||||||||||||||| || | ||| | | || Sbjct 772456 AAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCAAGAGTTCTTCCGTC 772515 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | || || || ||| |||||||||| || |||||| || | |||||||| || Sbjct 772516 TTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCCTTGTC 772575 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 || | |||| ||||| | ||| ||||||| | ||| || | || ||| Sbjct 772576 CTGGATCT-TTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACCTCCAAAGTAATGG 772634 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| |||| || || ||||| |||||||| Sbjct 772635 TCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 772668 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 18111 CTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAA 18170 || || |||| ||| || ||||||||||| || |||||||| || || | || || | Sbjct 14953302 CTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCAAGAGTGCGACCA 14953361 Query 18171 TCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTA 18230 || || | ||||| || ||| |||| ||||| ||||||||| || || |||||||| Sbjct 14953362 TCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGGACTCCTTCCTTG 14953421 Query 18231 TCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGAT 18289 || || | | |||| | | || ||| |||||| ||| ||||| ||| || Sbjct 14953422 TCTTGGATCT-TAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACTTCAAGGGTAAT 14953480 Query 18290 GCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||| ||||| | || || ||||| || ||||| Sbjct 14953481 GGTTTTACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| ||||||||||| ||||||||||| ||||||| || | |||| Sbjct 772685 AGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCT 772744 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || || | || | |||||| |||||| || | ||||||||| || Sbjct 772745 TCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCC 772804 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | | ||| || | | | |||||| | ||| || | ||||| | Sbjct 772805 TGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATAGTC 772864 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | |||||| || || |||||||| Sbjct 772865 TTGCCAGTGAGTGTTTTCACGAAGATTTGCAT 772896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343967637215