Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 237 2e-57 seq3 154 2e-32 seq2 82.4 1e-10 >seq5 Length=26975502 Score = 237 bits (262), Expect = 2e-57 Identities = 439/631 (70%), Gaps = 25/631 (4%) Strand=Plus/Minus Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 |||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| ||||| Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGA 33694 |||||||| ||||||| || || || || | ||| ||||| ||| | || | | ||||| Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGA 16408683 Query 33695 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 33754 ||||| || ||||| || |||||| || | | |||||| | | || || Sbjct 16408682 GAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAA----GCTTTGAG 16408627 Query 33755 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810 || || ||||| || |||||| || || || || | ||||||| || ||||| | Sbjct 16408626 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGA 16408569 Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870 | ||| ||| |||| | | | || || | ||||| | ||| || |||| | |||| Sbjct 16408568 TTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGAC 16408509 Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930 ||||||| || || ||||| || ||||| || || || ||||||||||| | ||| | Sbjct 16408508 TATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 16408449 Query 33931 CGGTAATCTGCACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 | | ||||| || || | ||| |||| || | ||| || || ||||| || Sbjct 16408448 CTGAGATCTGAACATCGG-ACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCT 16408390 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT--GTTAG 34045 || || || || || | || ||||| || || | |||||| |||| || || Sbjct 16408389 GATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAG 16408330 Query 34046 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 ||| | ||| || |||| |||| ||| | ||| |||||||| ||||||| || || Sbjct 16408329 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGA 16408274 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||| || || || || ||||| | ||| || | | |||||||||||||| ||| || Sbjct 16408273 TGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGAA 16408214 Query 34163 TCTATTTGGATTTGGTGCAAGGATAGGTTCC 34193 || || ||| |||||| ||||| |||||| Sbjct 16408213 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183 >seq3 Length=23459830 Score = 154 bits (170), Expect = 2e-32 Identities = 297/432 (69%), Gaps = 7/432 (2%) Strand=Plus/Plus Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| || |||||| | || ||||| || ||||| || ||||| |||||| | Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||||| | | | || || ||||||| | ||||||||||| | ||||||||||| Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| || ||||||||||| || ||||| || ||||||||| | ||||| | | Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACT 9980782 Query 33939 TGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 || || || | ||| || || || | ||| || || ||||| ||| || || Sbjct 9980783 TGAACATC-GGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGC 9980841 Query 33998 AAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTCTGGTGTTAGT-TTATTCC 34053 || || || | || ||||| || || | || |||| | || | | || | || Sbjct 9980842 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTC-GTTGAGACTGTTTTCCC 9980900 Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | || | | |||| |||| ||| |||||||| | ||||| |||||||| || || | Sbjct 9980901 AGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTT 9980960 Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173 |||| ||||| | |||||| | | || || |||||||| ||| ||||| | ||| Sbjct 9980961 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGG 9981020 Query 34174 TTGGTGCAAGGA 34185 |||||| |||| Sbjct 9981021 TTGGTGTTAGGA 9981032 >seq2 Length=19698289 Score = 82.4 bits (90), Expect = 1e-10 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| || || | || | ||| || | || | || | || ||| |||| |||||| Sbjct 9294859 TCCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACC 9294800 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 || ||| | ||||| || || || || | ||| | |||||||||||| || ||| Sbjct 9294799 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGA 9294740 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 9294739 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 9294680 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||| || ||||||||||| ||||| | |||||| |||||| Sbjct 9294679 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817544890960