Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq5 237 2e-57
seq3 154 2e-32
seq2 82.4 1e-10
>seq5
Length=26975502
Score = 237 bits (262), Expect = 2e-57
Identities = 439/631 (70%), Gaps = 25/631 (4%)
Strand=Plus/Minus
Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635
|||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| |||||
Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742
Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCGGA 33694
|||||||| ||||||| || || || || | ||| ||||| ||| | || | | |||||
Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGA 16408683
Query 33695 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 33754
||||| || ||||| || |||||| || | | |||||| | | || ||
Sbjct 16408682 GAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAA----GCTTTGAG 16408627
Query 33755 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33810
|| || ||||| || |||||| || || || || | ||||||| || ||||| |
Sbjct 16408626 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGA 16408569
Query 33811 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33870
| ||| ||| |||| | | | || || | ||||| | ||| || |||| | ||||
Sbjct 16408568 TTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGAC 16408509
Query 33871 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33930
||||||| || || ||||| || ||||| || || || ||||||||||| | ||| |
Sbjct 16408508 TATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 16408449
Query 33931 CGGTAATCTGCACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989
| | ||||| || || | ||| |||| || | ||| || || ||||| ||
Sbjct 16408448 CTGAGATCTGAACATCGG-ACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCT 16408390
Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--TGGT--GTTAG 34045
|| || || || || | || ||||| || || | |||||| |||| || ||
Sbjct 16408389 GATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAG 16408330
Query 34046 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102
||| | ||| || |||| |||| ||| | ||| |||||||| ||||||| || ||
Sbjct 16408329 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGA 16408274
Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
||| || || || || ||||| | ||| || | | |||||||||||||| ||| ||
Sbjct 16408273 TGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGAA 16408214
Query 34163 TCTATTTGGATTTGGTGCAAGGATAGGTTCC 34193
|| || ||| |||||| ||||| ||||||
Sbjct 16408213 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183
>seq3
Length=23459830
Score = 154 bits (170), Expect = 2e-32
Identities = 297/432 (69%), Gaps = 7/432 (2%)
Strand=Plus/Plus
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
||||| || |||||| | || ||||| || ||||| || ||||| |||||| |
Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
||||||| | | | || || ||||||| | ||||||||||| | |||||||||||
Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
||||| || ||||||||||| || ||||| || ||||||||| | ||||| | |
Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACT 9980782
Query 33939 TGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997
|| || || | ||| || || || | ||| || || ||||| ||| || ||
Sbjct 9980783 TGAACATC-GGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGC 9980841
Query 33998 AAAAAACGCCAATACATGTTTTATAAA---ATATTTTTCGTCTGGTGTTAGT-TTATTCC 34053
|| || || | || ||||| || || | || |||| | || | | || | ||
Sbjct 9980842 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTC-GTTGAGACTGTTTTCCC 9980900
Query 34054 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| || | | |||| |||| ||| |||||||| | ||||| |||||||| || || |
Sbjct 9980901 AGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTT 9980960
Query 34114 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGAT 34173
|||| ||||| | |||||| | | || || |||||||| ||| ||||| | |||
Sbjct 9980961 TTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGG 9981020
Query 34174 TTGGTGCAAGGA 34185
|||||| ||||
Sbjct 9981021 TTGGTGTTAGGA 9981032
>seq2
Length=19698289
Score = 82.4 bits (90), Expect = 1e-10
Identities = 152/223 (68%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481
|||||| || || | || | ||| || | || | || | || ||| |||| ||||||
Sbjct 9294859 TCCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACC 9294800
Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541
|| ||| | ||||| || || || || | ||| | |||||||||||| || |||
Sbjct 9294799 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGA 9294740
Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601
| ||| || ||||| || ||| || | || || ||| | || ||||| ||
Sbjct 9294739 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 9294680
Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644
||| || ||||||||||| ||||| | |||||| ||||||
Sbjct 9294679 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817544890960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |