Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq5 136 4e-27
seq2 91.5 1e-13
>seq5
Length=26975502
Score = 136 bits (150), Expect = 4e-27
Identities = 439/669 (66%), Gaps = 28/669 (4%)
Strand=Plus/Minus
Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397
|| ||||| |||| ||||| || | || ||||| || |||||||| | || || || |
Sbjct 16409086 TTCTGATACTCACCAACTC-TCTTCTCAAAAAAGTTGGTCTTACCCTGAAGCGAAATCAA 16409028
Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457
||||| | |||||||||| ||| | || || |||| || | | | | ||
Sbjct 16409027 TTCCATCCAATCAAAAGGATTAGTCACACCATACACCTTACCACACCCAAGCGCAGCCAA 16408968
Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517
|| ||||| || ||||| || || |||||| ||| || || |||||| || | |
Sbjct 16408967 CAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGATTCATCCCAACCA- 16408909
Query 11518 ATCCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATT 11575
| ||| ||| ||| | |||| ||||| | || || | ||| |||||| |
Sbjct 16408908 AGGCACAAGAA-AGCGCGTCACAAACAAACTCTCTCTCAATCTCAACAGCATCACAAACA 16408850
Query 11576 ATCGACGTTATAAC----TTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACA 11631
|||| | || ||| ||| | | | | | | ||| || | || | || |||||
Sbjct 16408849 ATCG-CTTTCAAACGATCTTCATCAAACT-TAGTTCTAAGAA--GACTATATATCAAACA 16408794
Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691
|| |||||||| || | |||||||||||| || | ||| || ||||| || | |||
Sbjct 16408793 AGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCC 16408734
Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751
||||| || |||||||| || | ||| ||||| | | ||| ||| || ||||||||
Sbjct 16408733 AGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATAT 16408674
Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT----- 11806
|| || || ||||| ||||| | ||| || | | | ||| ||||
Sbjct 16408673 ACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGC-GAAGCTTTG-----AGATCCGTT 16408620
Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865
|||||||| | ||||| || |||| |||| | || || ||||| || ||
Sbjct 16408619 GATCCATTTCATAGCCCATTCTGCTT--TTTTCGTCACAAGGAATGGTTTCGATTGCACG 16408562
Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925
||| | ||| | | ||| | || ||| | | ||| || || | | | |||||||||
Sbjct 16408561 AAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTATACAT 16408502
Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985
|| || |||||||| || || || ||||| ||||| ||||| || || |||||
Sbjct 16408501 CTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGAT 16408442
Query 11986 CTGTACATC 11994
||| |||||
Sbjct 16408441 CTGAACATC 16408433
>seq2
Length=19698289
Score = 91.5 bits (100), Expect = 1e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459
||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | |
Sbjct 9294529 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 9294470
Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519
|||| ||| || |||| || || ||| |||||| | ||| || || | ||
Sbjct 9294469 AGACATCAAATGGTAGGTTTGGATCACGGAATCAATATCATCCTTGTGGATCCCAACAGC 9294410
Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|||||||| ||||| ||||| || |||||
Sbjct 9294409 AACCCTCATCAGCATGTGTTGAGGCCTTTC 9294380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468524759004080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |