Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 136 4e-27 seq2 91.5 1e-13 >seq5 Length=26975502 Score = 136 bits (150), Expect = 4e-27 Identities = 439/669 (66%), Gaps = 28/669 (4%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 || ||||| |||| ||||| || | || ||||| || |||||||| | || || || | Sbjct 16409086 TTCTGATACTCACCAACTC-TCTTCTCAAAAAAGTTGGTCTTACCCTGAAGCGAAATCAA 16409028 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||| | |||||||||| ||| | || || |||| || | | | | || Sbjct 16409027 TTCCATCCAATCAAAAGGATTAGTCACACCATACACCTTACCACACCCAAGCGCAGCCAA 16408968 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 || ||||| || ||||| || || |||||| ||| || || |||||| || | | Sbjct 16408967 CAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGATTCATCCCAACCA- 16408909 Query 11518 ATCCACCGGAATAGCAACTGTCAAA--AACTCCTTTTCTATATTAACCGCATCAATGATT 11575 | ||| ||| ||| | |||| ||||| | || || | ||| |||||| | Sbjct 16408908 AGGCACAAGAA-AGCGCGTCACAAACAAACTCTCTCTCAATCTCAACAGCATCACAAACA 16408850 Query 11576 ATCGACGTTATAAC----TTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACA 11631 |||| | || ||| ||| | | | | | | ||| || | || | || ||||| Sbjct 16408849 ATCG-CTTTCAAACGATCTTCATCAAACT-TAGTTCTAAGAA--GACTATATATCAAACA 16408794 Query 11632 CGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCC 11691 || |||||||| || | |||||||||||| || | ||| || ||||| || | ||| Sbjct 16408793 AGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCC 16408734 Query 11692 GGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATAT 11751 ||||| || |||||||| || | ||| ||||| | | ||| ||| || |||||||| Sbjct 16408733 AGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATAT 16408674 Query 11752 TCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT----- 11806 || || || ||||| ||||| | ||| || | | | ||| |||| Sbjct 16408673 ACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGC-GAAGCTTTG-----AGATCCGTT 16408620 Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 |||||||| | ||||| || |||| |||| | || || ||||| || || Sbjct 16408619 GATCCATTTCATAGCCCATTCTGCTT--TTTTCGTCACAAGGAATGGTTTCGATTGCACG 16408562 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| | ||| | | ||| | || ||| | | ||| || || | | | ||||||||| Sbjct 16408561 AAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTATACAT 16408502 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 || || |||||||| || || || ||||| ||||| ||||| || || ||||| Sbjct 16408501 CTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGAT 16408442 Query 11986 CTGTACATC 11994 ||| ||||| Sbjct 16408441 CTGAACATC 16408433 >seq2 Length=19698289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| ||||||||| ||||| || | |||||||||||||| |||||||| | | Sbjct 9294529 TTGAGGCCTTGGAGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTG 9294470 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| || |||| || || ||| |||||| | ||| || || | || Sbjct 9294469 AGACATCAAATGGTAGGTTTGGATCACGGAATCAATATCATCCTTGTGGATCCCAACAGC 9294410 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||| ||||| ||||| || ||||| Sbjct 9294409 AACCCTCATCAGCATGTGTTGAGGCCTTTC 9294380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524759004080