Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 210 3e-49 seq3 131 2e-25 seq2 96.9 5e-15 >seq5 Length=26975502 Score = 210 bits (232), Expect = 3e-49 Identities = 433/631 (69%), Gaps = 25/631 (4%) Strand=Plus/Minus Query 36152 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 36211 |||||||| |||||||| ||||| ||||| |||||||| ||| |||||||| ||||| Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742 Query 36212 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 36270 |||||||| ||||||| || || || || | ||| ||||| || |||| | | || || Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGA 16408683 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 36330 ||||| || ||||| || ||||| || | | |||||| | | || || Sbjct 16408682 GAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAA----GCTTTGAG 16408627 Query 36331 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 || || ||||| || |||||| || || || || | ||||||| || || || | Sbjct 16408626 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGA 16408569 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 | ||| ||| |||| | | | || || | ||||| | ||| || || | | |||| Sbjct 16408568 TTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGAC 16408509 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 ||||||| || || ||||| || ||||| || ||||| ||||||||||| | ||| | Sbjct 16408508 TATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 16408449 Query 36507 CGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 | | ||||| || || | ||| |||| || | ||| || || |||||||| Sbjct 16408448 CTGAGATCTGAACATC-GGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCT 16408390 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGT--GTTAG 36621 || || || || || | || ||||| || || | ||||| ||||| || || Sbjct 16408389 GATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAG 16408330 Query 36622 TTTATTCCAATC---ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 36678 ||| | ||| || |||| |||| ||| | ||| |||||||| ||||||| || || Sbjct 16408329 TTT-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGA 16408274 Query 36679 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 ||| || || || || ||||| | ||| || | | ||||| ||||| || ||| || Sbjct 16408273 TGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGAA 16408214 Query 36739 TCTATTTTGATTTTTTGCAAGGATTGGTTCC 36769 || || | | || || |||||||||||| Sbjct 16408213 TCGATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183 >seq3 Length=23459830 Score = 131 bits (144), Expect = 2e-25 Identities = 281/414 (68%), Gaps = 11/414 (3%) Strand=Plus/Plus Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| || |||||| | || ||||| || ||||| ||||| || || ||| | Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 ||||||| | | | || || ||||||| | ||| ||||| | | ||||||||||| Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 ||||| || ||||||||||| || || || || ||||||||| | ||||| | | Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACT 9980782 Query 36515 TGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 || || || | ||| || || || | ||| || || ||||||||| || || Sbjct 9980783 TGAACATC-GGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGC 9980841 Query 36574 AAAAAACGCCAATACATGTTTTATAAAAT-ATTTT-----TCGTTTGGTGTTAGTTTATT 36627 || || || | || ||||| || || | | || ||||| | | |||| | Sbjct 9980842 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTT--GAGACTGTTT-TC 9980898 Query 36628 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 ||| || | | |||| |||| ||| |||||||| | ||||| |||||||| || || Sbjct 9980899 CCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGC 9980958 Query 36688 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 ||||| ||||| | |||||| | | || |||||||| || ||| ||||| Sbjct 9980959 TTTTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCT 9981012 >seq2 Length=19698289 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | || | ||| || | || | || | || ||| |||| |||||| Sbjct 9294859 TCCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACC 9294800 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||| ||||| ||||| || || || || ||||| | |||||||||||| || ||| Sbjct 9294799 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGA 9294740 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 9294739 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 9294680 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 |||||| || |||||||| ||||| | |||||| |||||| Sbjct 9294679 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172742409880