Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 4e-12 >seq3 Length=23459830 Score = 86.0 bits (94), Expect = 4e-12 Identities = 252/385 (65%), Gaps = 4/385 (1%) Strand=Plus/Minus Query 22798 ATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATT 22857 || ||||||||||||||||| |||||||| || || | || || ||||| ||||| Sbjct 9980432 ATCTTCTGGCTGAAGAAACGAGGACTCATGCCTGGATTAACATTCTCAAACGAATTGATC 9980373 Query 22858 AGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAAC 22917 |||||||||||| |||||||||| || |||||| | || | | || | | |||| Sbjct 9980372 TCACGTGACGAAGGTTTACACTGTGATTTCGCTTGTCTACTCTACACGCTACT-CAAAAC 9980314 Query 22918 AAACCGTGTC--AGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGG 22975 ||| | | | || ||| | ||| |||| | | || || || || || |||| | Sbjct 9980313 AAAGCTTAGCGAAGAACGCGTGAAATC-AATCGTCTGCGACGCGGTCGAAATCGAGAGAG 9980255 Query 22976 CTTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGAC 23035 || | || || || | | | |||| ||||| |||| ||||| | Sbjct 9980254 AGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAACCGTGATTTGATGAGTC 9980195 Query 23036 TGTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATA 23095 ||| || |||||||||| ||| | || | | ||| || || || | ||| |||| Sbjct 9980194 AGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCGCTTGGGTACGGGAAGGTGTACG 9980135 Query 23096 ACGTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCT 23155 ||| | ||||| || |||| ||||| ||| || |||| ||||| || |||| Sbjct 9980134 GTGTTACTAATCCGTTCGATTGGATGGAACTTATTTCACTTCAAGGGAAAACGAATTTCT 9980075 Query 23156 TTGAACGCCGTGTGAGTGAATATCA 23180 | || ||||| |||| || || Sbjct 9980074 TCGAGAAACGTGTTGGTGATTACCA 9980050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233569608821