Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 116 4e-21 seq1 113 4e-20 seq4 87.8 2e-12 >seq5 Length=26975502 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | ||| || |||| || || ||||| |||||||| |||||| | Sbjct 772670 CCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCC 772729 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||||||||| || | || | | ||||||||| ||||| Sbjct 772730 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGA 772789 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | |||| ||| | | || | ||||| | | ||| || Sbjct 772790 ATGCCTTCCTTGTC-CTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 772848 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||| || | ||||| ||||| |||||||| Sbjct 772849 CTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCAT 772896 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || || |||| || ||||| ||||||||||| || || Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| ||||| ||||| ||| |||| || | |||||||| ||||| Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| ||| ||| | | || | ||||| | | ||| ||| Sbjct 772562 ATTCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACC 772621 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| |||| || || || || ||||||||| Sbjct 772622 TCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATA 772669 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620 |||| || ||||| ||||| ||||| ||||| | |||| || | ||||||||||| Sbjct 772238 TGAAGTGTCGACTCCTTTTGGATGTTGTAATCTGCAAGGGTGCGTCCA-TCTTCGAGCTG 772296 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||| ||| |||| || | |||||||| ||||| || || ||||| || ||| || Sbjct 772297 CTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCTTGGATCTT 772356 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| | | || | ||||| | ||| ||||||| ||| | || || || || Sbjct 772357 AGCTTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCAAGGGTGATTGTTTTACCAGT 772416 Query 139741 CAACGTTTTTACGAATATTTGCATA 139765 | || || || || ||||||||| Sbjct 772417 GAGGGTCTTGACAAAGATTTGCATA 772441 >seq1 Length=30427671 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| ||||||||||| || ||||| ||||| | Sbjct 24276596 CCACCACGAAGACGCAATACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 24276655 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || |||||||||||||||||| |||| || | || || || || || Sbjct 24276656 AAAGTCCTTCCATCCTCGAGCTGTTTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGG 24276715 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || | ||| || || ||| | || | ||| | | || | |||||| | | ||| || Sbjct 24276716 ATCCATTCCTTATC-CTGAATCTTAGCTTTGACATTATCAATTGTGTCTGAGCTCTCAAC 24276774 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | |||||||| ||||| ||||| || || ||||||||| Sbjct 24276775 CTCCAAGGTAATGGTCTTGCCTGTCAAAGTTTTCACAAAGATTTGCATA 24276823 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || |||| | ||| | ||| || |||| ||| |||||||| || ||||| ||||| ||| Sbjct 8315166 CCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGCT 8315107 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| || ||||| | ||||| || || |||||| ||||||||||| || || Sbjct 8315106 -AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGG 8315048 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || ||| | | || | |||||| | | || || Sbjct 8315047 GATTCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGATGATTCTAC 8314988 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 8314987 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 8314940 >seq4 Length=18585056 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || |||| ||||||||| || || ||||| ||||| | Sbjct 2588506 CCTCCACGCAGACGCAAGACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAATCCGCC 2588565 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| || || || || || || |||||| | ||||| || ||||| Sbjct 2588566 AAAGTTCTGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGA 2588625 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || || || ||| || || | | || | ||||| | | ||||||| Sbjct 2588626 ATACCCTCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACC 2588685 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | |||||| || || | ||||| ||||| || |||||| Sbjct 2588686 TCAAGAGTAATCGTCTTTCCCGTTAGGGTTTTAACGAAAATCTGCATA 2588733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063956594400