Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 239 6e-58 seq3 174 2e-38 seq2 100 4e-16 >seq5 Length=26975502 Score = 239 bits (264), Expect = 6e-58 Identities = 438/629 (70%), Gaps = 21/629 (3%) Strand=Plus/Minus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 |||||||| |||||||| ||||| ||||| |||||||| ||| | |||||| ||||| Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073 |||||||| ||||||| || || || || | ||| ||||| || ||| || || Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAG 16408682 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTC 50132 ||||| || ||||| || ||||| || || | |||||| | | || | | | Sbjct 16408681 AAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTTTGAGATCCG 16408622 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || ||||| || |||||| || || || || | ||||||| || ||||| || || Sbjct 16408621 TTG-ATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATTGC 16408565 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 | ||| |||| | | | || || | ||||| | ||| || |||| | |||||||| Sbjct 16408564 ACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTATA 16408505 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 ||| || || ||||| || ||||| || || || ||||||||||| | ||| || | Sbjct 16408504 CATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 16408445 Query 50313 AATCTGCACTTCTGTACAA-AATC--GTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 ||||| || || | ||| |||| ||| || | ||| || || |||||||| Sbjct 16408444 GATCTGAACATCGG-ACATGAATCTAGTTGAG--AGATTCTCGAGAACGATTCCGTCTGA 16408388 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATG---TTTTTCGTTGGGT-GTTAGTT 50425 || || || || || | || ||||| || || || || ||||||| | || |||| Sbjct 16408387 TGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTT 16408328 Query 50426 TATTCCAATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 | | ||| || |||| |||| ||| | ||| |||||||| ||||||| || |||| Sbjct 16408327 T-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATG 16408272 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 | || || || || ||||| | ||| || | | |||||||||||||| ||| |||| Sbjct 16408271 CTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGAATC 16408212 Query 50543 TATTTGGATTTGGTGCAAGGATCGGTTCC 50571 || ||| |||||| ||||| |||||| Sbjct 16408211 GATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183 >seq3 Length=23459830 Score = 174 bits (192), Expect = 2e-38 Identities = 307/441 (70%), Gaps = 11/441 (2%) Strand=Plus/Plus Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || |||||| | || ||||| || ||||| || ||||| |||||| | Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||||| | | | || || ||||||| | ||||||||||| | ||||||||||| Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 ||||| || ||||||||||| || ||||| || ||||||||| | ||||| | | Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACT 9980782 Query 50317 TGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 || || || | ||| || || ||| | ||| || || ||||||||| || || Sbjct 9980783 TGAACATC-GGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGC 9980841 Query 50376 AAAAAACGCCAATACATGTTTTATAAA---ATGTT---TTTCGTTGGGTGTTAGTTTATT 50429 || || || | || ||||| || || | ||| |||||| | | |||| | Sbjct 9980842 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGACT--GTTT-TC 9980898 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| || | | |||| |||| |||||||||||| | ||||| |||||||| || || Sbjct 9980899 CCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGC 9980958 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 50549 ||||| ||||| | |||||| | | || || |||||||| ||| ||||| | ||| Sbjct 9980959 TTTTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 9981018 Query 50550 ATTTGGTGCAAGGATCGGTTC 50570 |||||| |||| ||| || Sbjct 9981019 GGTTGGTGTTAGGAGCGGCTC 9981039 >seq2 Length=19698289 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| || || | || | ||| || | || | || | || ||| |||| |||||| Sbjct 9294859 TCCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACC 9294800 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || || || ||||| | |||||||||||| || ||| Sbjct 9294799 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGA 9294740 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 9294739 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 9294680 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 |||||| ||||||||||| ||||| | |||||| |||||| Sbjct 9294679 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 ||| ||||| || ||||| | ||||| ||||||||||| ||||||||||| | | | || Sbjct 9296154 GAGGATAAATGCATCTGCAAGGCCTTGTACACCAATACCAATAGGTCTATGACGCATGTT 9296095 Query 79485 AGAAATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 ||| ||| || ||| | |||||| ||||| | |||||| || ||||||||||| Sbjct 9296094 TGAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 9296038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268737151480