Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq5 239 6e-58
seq3 174 2e-38
seq2 100 4e-16
>seq5
Length=26975502
Score = 239 bits (264), Expect = 6e-58
Identities = 438/629 (70%), Gaps = 21/629 (3%)
Strand=Plus/Minus
Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013
|||||||| |||||||| ||||| ||||| |||||||| ||| | |||||| |||||
Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742
Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAA 50073
|||||||| ||||||| || || || || | ||| ||||| || ||| || ||
Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAG 16408682
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG-GCGCTGTC 50132
||||| || ||||| || ||||| || || | |||||| | | || | | |
Sbjct 16408681 AAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAAGCTTTGAGATCCG 16408622
Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192
|| ||||| || |||||| || || || || | ||||||| || ||||| || ||
Sbjct 16408621 TTG-ATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATTGC 16408565
Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252
| ||| |||| | | | || || | ||||| | ||| || |||| | ||||||||
Sbjct 16408564 ACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGACTATA 16408505
Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312
||| || || ||||| || ||||| || || || ||||||||||| | ||| || |
Sbjct 16408504 CATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGA 16408445
Query 50313 AATCTGCACTTCTGTACAA-AATC--GTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369
||||| || || | ||| |||| ||| || | ||| || || ||||||||
Sbjct 16408444 GATCTGAACATCGG-ACATGAATCTAGTTGAG--AGATTCTCGAGAACGATTCCGTCTGA 16408388
Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATG---TTTTTCGTTGGGT-GTTAGTT 50425
|| || || || || | || ||||| || || || || ||||||| | || ||||
Sbjct 16408387 TGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTT 16408328
Query 50426 TATTCCAATC---ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482
| | ||| || |||| |||| ||| | ||| |||||||| ||||||| || ||||
Sbjct 16408327 T-TCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATG 16408272
Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542
| || || || || ||||| | ||| || | | |||||||||||||| ||| ||||
Sbjct 16408271 CTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGAATC 16408212
Query 50543 TATTTGGATTTGGTGCAAGGATCGGTTCC 50571
|| ||| |||||| ||||| ||||||
Sbjct 16408211 GATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183
>seq3
Length=23459830
Score = 174 bits (192), Expect = 2e-38
Identities = 307/441 (70%), Gaps = 11/441 (2%)
Strand=Plus/Plus
Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196
||||| || |||||| | || ||||| || ||||| || ||||| |||||| |
Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662
Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256
||||||| | | | || || ||||||| | ||||||||||| | |||||||||||
Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722
Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316
||||| || ||||||||||| || ||||| || ||||||||| | ||||| | |
Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACT 9980782
Query 50317 TGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375
|| || || | ||| || || ||| | ||| || || ||||||||| || ||
Sbjct 9980783 TGAACATC-GGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGC 9980841
Query 50376 AAAAAACGCCAATACATGTTTTATAAA---ATGTT---TTTCGTTGGGTGTTAGTTTATT 50429
|| || || | || ||||| || || | ||| |||||| | | |||| |
Sbjct 9980842 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGACT--GTTT-TC 9980898
Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489
||| || | | |||| |||| |||||||||||| | ||||| |||||||| || ||
Sbjct 9980899 CCAGTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGC 9980958
Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 50549
||||| ||||| | |||||| | | || || |||||||| ||| ||||| | |||
Sbjct 9980959 TTTTTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGG 9981018
Query 50550 ATTTGGTGCAAGGATCGGTTC 50570
|||||| |||| ||| ||
Sbjct 9981019 GGTTGGTGTTAGGAGCGGCTC 9981039
>seq2
Length=19698289
Score = 100 bits (110), Expect = 4e-16
Identities = 156/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| || || | || | ||| || | || | || | || ||| |||| ||||||
Sbjct 9294859 TCCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACC 9294800
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||||| ||||| || || || || ||||| | |||||||||||| || |||
Sbjct 9294799 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGA 9294740
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| || ||||| || ||| || | || || ||| | || ||||| ||
Sbjct 9294739 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 9294680
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|||||| ||||||||||| ||||| | |||||| ||||||
Sbjct 9294679 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637
Score = 84.2 bits (92), Expect = 3e-11
Identities = 91/118 (77%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484
||| ||||| || ||||| | ||||| ||||||||||| ||||||||||| | | | ||
Sbjct 9296154 GAGGATAAATGCATCTGCAAGGCCTTGTACACCAATACCAATAGGTCTATGACGCATGTT 9296095
Query 79485 AGAAATTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541
||| ||| || ||| | |||||| ||||| | |||||| || |||||||||||
Sbjct 9296094 TGAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 9296038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268737151480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |