Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5 187 2e-42 seq3 82.4 7e-11 >seq5 Length=26975502 Score = 187 bits (206), Expect = 2e-42 Identities = 566/858 (66%), Gaps = 26/858 (3%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| ||||| |||| |||||| || ||||| ||||| || ||||| | || || || Sbjct 16409087 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCCTGAAGCGAAATCAA 16409028 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698 |||||| ||||||| ||||| | | ||| | |||| ||| |||| || || | | Sbjct 16409027 TTCCATCCAATCAAAAGGATT-AGTCACACCATACACCTTACCACACCCAAGCGCAGCCA 16408969 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 || |||||||||| |||||||| || ||| ||| || |||| |||||| || | | Sbjct 16408968 ACAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGATTCATCCCAACCA 16408909 Query 13759 GTTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 ||| ||| | || ||| ||| | || || ||||| || | | Sbjct 16408908 AGGC-ACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAACAGCATCACAAACA 16408850 Query 13818 ATAATTGTAATA--ATCT-CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13874 || | | | | |||| ||| | | || | | ||| | || | || ||||| Sbjct 16408849 ATCGCTTTCAAACGATCTTCATCAAACTTAGT---TCTAAGAAGACTATATATCAAACAA 16408793 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 || |||||||| ||||| || || ||||| ||| | |||||||||||| || | ||| Sbjct 16408792 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCA 16408733 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| || |||||||| || ||||| ||||| | | ||| ||||| |||||||| Sbjct 16408732 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATA 16408673 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-AT 14053 || ||||| ||||||||||| | ||||| | ||| ||||| | || | || Sbjct 16408672 CCTTCAACGCAAGCAAACGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTGAT 16408617 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 |||||| |||||||||| | |||||| | | || || ||||| || ||| ||| Sbjct 16408616 CCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATTGCACGAAA 16408559 Query 14114 TAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | || || |||||| | || ||| || || || || | ||| | |||||||| Sbjct 16408558 AAGATGATCTCTCTCTTTGTTGTCTTTG--ATATACGTGTCGAGAAGGAGACTATACATC 16408501 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 || ||||| || || || || || || || || || || ||| | |||||| || Sbjct 16408500 TCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATC 16408441 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || || || || ||||| | | ||| || ||| || || || || || Sbjct 16408440 TGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCG 16408381 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAA 14348 || || || | | || |||||| |||| | || || ||| | ||| |||| ||| Sbjct 16408380 AAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAG 16408321 Query 14349 TCG-GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 ||| ||| || | ||| ||||| ||||| || ||||||| || || | ||||| Sbjct 16408320 TCGCGAT-TGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGCTTT 16408262 Query 14408 TTTATACATTACCCATAT 14425 || ||||| |||| || Sbjct 16408261 CTTGTACATCTCCCAAAT 16408244 >seq3 Length=23459830 Score = 82.4 bits (90), Expect = 7e-11 Identities = 118/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 |||||||| ||||||||| || ||| || | || ||||||||||| ||| | Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 || | || || ||||||| || | || || ||||| | ||| | |||||||| Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCA 14215 || ||||| |||||||| || || ||||| ||||| || |||||| Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCA 9980767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727958023800