Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq5 187 2e-42
seq3 82.4 7e-11
>seq5
Length=26975502
Score = 187 bits (206), Expect = 2e-42
Identities = 566/858 (66%), Gaps = 26/858 (3%)
Strand=Plus/Minus
Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639
||| ||||| |||| |||||| || ||||| ||||| || ||||| | || || ||
Sbjct 16409087 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCCTGAAGCGAAATCAA 16409028
Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13698
|||||| ||||||| ||||| | | ||| | |||| ||| |||| || || | |
Sbjct 16409027 TTCCATCCAATCAAAAGGATT-AGTCACACCATACACCTTACCACACCCAAGCGCAGCCA 16408969
Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758
|| |||||||||| |||||||| || ||| ||| || |||| |||||| || | |
Sbjct 16408968 ACAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGATTCATCCCAACCA 16408909
Query 13759 GTTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817
||| ||| | || ||| ||| | || || ||||| || | |
Sbjct 16408908 AGGC-ACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAACAGCATCACAAACA 16408850
Query 13818 ATAATTGTAATA--ATCT-CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13874
|| | | | | |||| ||| | | || | | ||| | || | || |||||
Sbjct 16408849 ATCGCTTTCAAACGATCTTCATCAAACTTAGT---TCTAAGAAGACTATATATCAAACAA 16408793
Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934
|| |||||||| ||||| || || ||||| ||| | |||||||||||| || | |||
Sbjct 16408792 GCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCA 16408733
Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994
||||| || |||||||| || ||||| ||||| | | ||| ||||| ||||||||
Sbjct 16408732 GGCATTAAACCTCGTTTCTTCAACCAGAATATCGAACAAAAGCTACCGGAGAAGAATATA 16408673
Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-AT 14053
|| ||||| ||||||||||| | ||||| | ||| ||||| | || | ||
Sbjct 16408672 CCTTCAACGCAAGCAAACGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTGAT 16408617
Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113
|||||| |||||||||| | |||||| | | || || ||||| || ||| |||
Sbjct 16408616 CCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATTGCACGAAA 16408559
Query 14114 TAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171
| || || |||||| | || ||| || || || || | ||| | ||||||||
Sbjct 16408558 AAGATGATCTCTCTCTTTGTTGTCTTTG--ATATACGTGTCGAGAAGGAGACTATACATC 16408501
Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231
|| ||||| || || || || || || || || || || ||| | |||||| ||
Sbjct 16408500 TCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATC 16408441
Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291
|| || || || ||||| | | ||| || ||| || || || || ||
Sbjct 16408440 TGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCG 16408381
Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAA 14348
|| || || | | || |||||| |||| | || || ||| | ||| |||| |||
Sbjct 16408380 AAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAG 16408321
Query 14349 TCG-GATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407
||| ||| || | ||| ||||| ||||| || ||||||| || || | |||||
Sbjct 16408320 TCGCGAT-TGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGCTTT 16408262
Query 14408 TTTATACATTACCCATAT 14425
|| ||||| |||| ||
Sbjct 16408261 CTTGTACATCTCCCAAAT 16408244
>seq3
Length=23459830
Score = 82.4 bits (90), Expect = 7e-11
Identities = 118/165 (72%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111
|||||||| ||||||||| || ||| || | || ||||||||||| ||| |
Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662
Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171
|| | || || ||||||| || | || || ||||| | ||| | ||||||||
Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722
Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCA 14215
|| ||||| |||||||| || || ||||| ||||| || ||||||
Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCA 9980767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479727958023800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |