Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5 188 7e-43 >seq5 Length=26975502 Score = 188 bits (208), Expect = 7e-43 Identities = 564/857 (66%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| |||| |||||| || ||||||||||| || ||||| | || || || Sbjct 16409087 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCCTGAAGCGAAATCAA 16409028 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 |||||| |||| || ||||| || ||| | |||| ||| |||| || || | | Sbjct 16409027 TTCCATCCAATCAAAAGGATTAGTC-ACACCATACACCTTACCACACCCAAGCGCAGCCA 16408969 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | || |||||||||| |||||||| || ||| ||| || |||| |||||| || | | Sbjct 16408968 ACAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGATTCATCCCAACCA 16408909 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 || || | | | ||| ||| | || || ||||| || | || Sbjct 16408908 AGGCACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAACAGCATCACAAACAA 16408849 Query 13607 TAATCTTAATA--ATGT-CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13663 | || | | || | ||| | | || | | ||| | || | || ||||| | Sbjct 16408848 TCGCTTTCAAACGATCTTCATCAAACTTAGT---TCTAAGAAGACTATATATCAAACAAG 16408792 Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723 | |||||||| ||||| || || ||||| ||| | |||||||||||| || | ||| | Sbjct 16408791 CGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAG 16408732 Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATT 13782 |||| || |||||||| || ||||| ||||| | | | || | | ||||| |||||||| Sbjct 16408731 GCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGAGAAGAATATA 16408673 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT-AT 13841 || ||||| ||||||||||| | ||||| | ||| ||||| | | | || Sbjct 16408672 CCTTCAACGCAAGCAAACGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTGAT 16408617 Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901 |||||| |||||||||| | |||||| | | || || |||||||||||| || Sbjct 16408616 CCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATTGCACGAAA 16408559 Query 13902 TAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 | ||| || |||||| | || ||| || || || || | ||| | |||||||| Sbjct 16408558 AAGATGATCTCTCTCTTTGTTGTCTTTG--ATATACGTGTCGAGAAGGAGACTATACATC 16408501 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 || ||||| || || || || || || || || || || || | ||||||||| Sbjct 16408500 TCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATC 16408441 Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 || || || || ||||| || | || || ||| || || || || || Sbjct 16408440 TGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCG 16408381 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAA 14136 || || || | | || |||||| |||| | || || ||| | ||| |||| ||| Sbjct 16408380 AAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAG 16408321 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 ||| || | ||| ||||| ||||| || ||||||| || || | ||||| Sbjct 16408320 TCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGCTTTC 16408261 Query 14197 TTATACATTACCCATAT 14213 || ||||| |||| || Sbjct 16408260 TTGTACATCTCCCAAAT 16408244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588758123480