Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq5 188 7e-43
>seq5
Length=26975502
Score = 188 bits (208), Expect = 7e-43
Identities = 564/857 (66%), Gaps = 24/857 (3%)
Strand=Plus/Minus
Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427
||| ||||| |||| |||||| || ||||||||||| || ||||| | || || ||
Sbjct 16409087 TTTCTGATACTCACCAACTCTCTTCTCAAAAAAGTTGGTCTTACCCTGAAGCGAAATCAA 16409028
Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486
|||||| |||| || ||||| || ||| | |||| ||| |||| || || | |
Sbjct 16409027 TTCCATCCAATCAAAAGGATTAGTC-ACACCATACACCTTACCACACCCAAGCGCAGCCA 16408969
Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546
| || |||||||||| |||||||| || ||| ||| || |||| |||||| || | |
Sbjct 16408968 ACAACCTATCAGCAACGAACTCAATGTACTGACTCATCAACTCACGATTCATCCCAACCA 16408909
Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606
|| || | | | ||| ||| | || || ||||| || | ||
Sbjct 16408908 AGGCACAAGAAAGCGCGTCACAAACAAACTCTCTCTCAATCTCAACAGCATCACAAACAA 16408849
Query 13607 TAATCTTAATA--ATGT-CATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACG 13663
| || | | || | ||| | | || | | ||| | || | || ||||| |
Sbjct 16408848 TCGCTTTCAAACGATCTTCATCAAACTTAGT---TCTAAGAAGACTATATATCAAACAAG 16408792
Query 13664 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTG 13723
| |||||||| ||||| || || ||||| ||| | |||||||||||| || | ||| |
Sbjct 16408791 CGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAAGTGAGTCCAG 16408732
Query 13724 GCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAATATT 13782
|||| || |||||||| || ||||| ||||| | | | || | | ||||| ||||||||
Sbjct 16408731 GCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGAGAAGAATATA 16408673
Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT-AT 13841
|| ||||| ||||||||||| | ||||| | ||| ||||| | | | ||
Sbjct 16408672 CCTTCAACGCAAGCAAACGCTACGA----TTCTCTCAGCGAAGCTTTGAGATCCGTTGAT 16408617
Query 13842 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901
|||||| |||||||||| | |||||| | | || || |||||||||||| ||
Sbjct 16408616 CCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGATTGCACGAAA 16408559
Query 13902 TAAATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959
| ||| || |||||| | || ||| || || || || | ||| | ||||||||
Sbjct 16408558 AAGATGATCTCTCTCTTTGTTGTCTTTG--ATATACGTGTCGAGAAGGAGACTATACATC 16408501
Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019
|| ||||| || || || || || || || || || || || | |||||||||
Sbjct 16408500 TCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTTCTGAGATC 16408441
Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079
|| || || || ||||| || | || || ||| || || || || ||
Sbjct 16408440 TGAACATCGGACATGAATCTAGTTGAGAGATTCTCGAGAACGATTCCGTCTGATGCGGCG 16408381
Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAA 14136
|| || || | | || |||||| |||| | || || ||| | ||| |||| |||
Sbjct 16408380 AAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTGAGTTTTCCCAG 16408321
Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196
||| || | ||| ||||| ||||| || ||||||| || || | |||||
Sbjct 16408320 TCGCGATTGTCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGGATGCTTCGGCTTTC 16408261
Query 14197 TTATACATTACCCATAT 14213
|| ||||| |||| ||
Sbjct 16408260 TTGTACATCTCCCAAAT 16408244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478588758123480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |