Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 214 2e-50 seq3 178 2e-39 seq2 87.8 2e-12 >seq5 Length=26975502 Score = 214 bits (236), Expect = 2e-50 Identities = 434/632 (69%), Gaps = 27/632 (4%) Strand=Plus/Minus Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 |||||||| |||||||| ||||| ||||| || ||||| ||| |||||||| ||||| Sbjct 16408801 ATCAAACAAGCGAAATCACAGTGAAGACCTTCGTCTCTCGAAATCAATTCGTTTGAAAAA 16408742 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 |||||||| ||||||| || || || || | ||| ||||| || |||| | | || || Sbjct 16408741 GTGAGTCCAGGCATTAAACCTCGTTTCTTCAACCAGAATATCGAA-CAAAAGCTACCGGA 16408683 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 ||||| || ||||| || ||||| || | | |||||| | | || || Sbjct 16408682 GAAGAATATACCTTCAACGCAAGCAAACGCTACGATTCTCTCAGCGAA----GCTTTGAG 16408627 Query 42238 AT--GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 || || ||||| || |||||| || || || || | ||||||| || ||||| | Sbjct 16408626 ATCCGTTGATCCATTTCATAGCCCATTCTGCTTTTTTCGT--CACAAGGAATGGTTTCGA 16408569 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | ||| ||| |||| | | | || || | ||||| | ||| || |||| | |||| Sbjct 16408568 TTGCACGAAAAAGATGATCTCTCTCTTTGTTGTCTTTGATATACGTGTCGAGAAGGAGAC 16408509 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 ||||||| || || ||||| || ||||| || || || ||||||||||| | || | Sbjct 16408508 TATACATCTCGGAGTGAATATTCTCAATCGCGATTTGGAATCCGTAGAAGGCACGAGCTT 16408449 Query 42414 CGGTAACCTGTACTTCTGTACA-AAATC--GTTCAGCTAAATTTTCGTTCACTATTCCGT 42470 | | | ||| || || | ||| |||| ||| || | ||| ||| || ||||||| Sbjct 16408448 CTGAGATCTGAACATC-GGACATGAATCTAGTTGAG--AGATTCTCGAGAACGATTCCGT 16408392 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA--- 42527 | || || || || || | || ||||| || || | |||||| |||| Sbjct 16408391 CTGATGCGGCGAAGAAGGCGAGGACGTGTTTAATGAAGTGACGTTCGTCGTTGGTTAGTG 16408332 Query 42528 ATTTATTCCAATC---ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATG 42584 | || | ||| || |||| |||| ||| | ||| |||||||| | ||||| || | Sbjct 16408331 AGTTTTCCCAGTCGCGATTG---TCTTGAGAGAGATCGACTTCTTCGGCTGTCCAGAAGG 16408275 Query 42585 ATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAA 42644 ||||||| || || || ||||| | ||| || | | ||||| |||||||| ||| | Sbjct 16408274 ATGCTTCGGCTTTCTTGTACATCTCCCAAATCTGTGGGTATTGGATTGGGAACATACAGA 16408215 Query 42645 ATCTATTTGGATTTGGTGCAAGGATCGGTTCC 42676 ||| || ||| |||||| ||||| |||||| Sbjct 16408214 ATCGATCTGGTGTTGGTGTTAGGATTGGTTCC 16408183 >seq3 Length=23459830 Score = 178 bits (196), Expect = 2e-39 Identities = 305/438 (70%), Gaps = 5/438 (1%) Strand=Plus/Plus Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| || |||||| | || ||||| || ||||| || ||||| |||||| | Sbjct 9980603 ATCCATTTCATAGCCCATTGAGCTTTCTTGGCGACGCAAGGGATTGTTTCAATGGCACGA 9980662 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||||| | | | || || ||||||| | ||| ||||||| | ||||||||||| Sbjct 9980663 AAGAGATGATCTCTCTCTTTGTTATCTTTGATATAAGTATCGAGAAGGAGACTATACATC 9980722 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || || ||||||||||| || ||||| || ||||||||| | ||||| | || Sbjct 9980723 TCCGAGTGGATGTTTTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCAGAGACT 9980782 Query 42422 TGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 || || || | ||| || || ||| | ||| || || ||||||||| || || Sbjct 9980783 TGAACATC-GGACATGAAGCGAGAAGCGAGATTCTCTAGTACGATTCCGTCAGATGCAGC 9980841 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAAT-TTATTCCA 42537 || || || | || ||||| || || | ||| | || || | | || | ||| Sbjct 9980842 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCACCGTCGTTGAGACTGTTTTCCCA 9980901 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | | |||| |||| |||||||||||| | ||||| ||||||||||| || || Sbjct 9980902 GTCGCGGTTGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAATGATGCTTCGGCTTT 9980961 Query 42598 TTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||| ||||| | |||||| | | || ||||||||||| ||| ||||| | ||| | Sbjct 9980962 TTTGTACATTTCCCAGATCTGTGGGTAGTGAATTGGGAACATACAGAATCTGTCTGGGGT 9981021 Query 42658 TGGTGCAAGGATCGGTTC 42675 ||||| |||| ||| || Sbjct 9981022 TGGTGTTAGGAGCGGCTC 9981039 >seq2 Length=19698289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| || || | || | ||| || | || | || | || ||| |||| |||||| Sbjct 9294859 TCCTCCTTGGTCAACATAACGAGCTGTATCGTTGAATACACGCAGCATAGGAACAATACC 9294800 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || || || ||||| | ||||||||||| || ||| Sbjct 9294799 ATTAGATGTTCCATTTGTGCCACGAATGTAACTTCCGGTAGCACGAATATTATGAACTGA 9294740 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || ||||| || ||| || | || || ||| | || ||||| || Sbjct 9294739 AACACCAATACCCCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 9294680 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 |||||| || |||||||| ||||| | |||||| |||||| Sbjct 9294679 GCCCTCAATGCTATCATCTTTCATGCAGACTAGAAAGCAGCTA 9294637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139141275320