Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 122 6e-23 seq5 102 6e-17 >seq1 Length=30427671 Score = 122 bits (134), Expect = 6e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | || ||| |||||||| || || ||||| || ||||||||||| | Sbjct 8315166 CCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGCT 8315107 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| |||||||| || ||| | ||||| ||||| || || ||| Sbjct 8315106 AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 8315047 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || || ||| || ||| | || || || || |||||| Sbjct 8315046 ATTCCTTCCTTGTCTTGGATCTTCGCT-TTCACATTGTCGATTGTGTCTGATGATTCTAC 8314988 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 |||||||| || || || || || || ||||| || || || ||||| || Sbjct 8314987 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 8314937 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || ||||| |||||||| || ||||| ||||||||||| Sbjct 24277049 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCG 24277108 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | || || || || | || | | || || || || Sbjct 24277109 AGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 24277168 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || || ||| ||| | || || ||||| | |||| || Sbjct 24277169 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACC 24277228 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| ||||||| ||| || |||||||| |||||| Sbjct 24277229 TCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCATA 24277276 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || ||||||||||| | | | || | || || | ||| Sbjct 24276620 TGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTCCTTCCATCCTCGAGCTGT 24276679 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | || | | |||||||| ||| || | ||| || || ||| || Sbjct 24276680 TTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCATTCCTTATCCTGAATCTTA 24276739 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || || || | || || || ||||||||||| || ||||| Sbjct 24276740 GCT-TTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATGGTCTTGCCTGT 24276798 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || |||||| ||||| ||||||||| Sbjct 24276799 CAAAGTTTTCACAAAGATTTGCATA 24276823 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || ||||||||||| || | | | | ||||| || Sbjct 20550191 TGAAGAGTTGACTCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCATGCTGC 20550132 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 ||||| || | || | | |||||||| || ||| ||||||||||| ||| ||| Sbjct 20550131 TTGCCTGCAAAGATGAGTCTCTGTTGGTCTGGTGAAATCCCTTCTTTGTCCTGAATCTTT 20550072 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || ||||| |||| || || | || ||||| || || || Sbjct 20550071 GC-CTTCACATTGTCAATCGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGT 20550013 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||| ||||| ||||| ||||| Sbjct 20550012 CAAAGTCTTTACGAAAATCTGCAT 20549989 >seq5 Length=26975502 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||| || || | ||| || || || || || ||||| || ||||||||||| || Sbjct 6974237 CCACCTCTTAACCTGAGAACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAATCAGCC 6974296 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||||| || || |||||| | ||||| | ||| ||||| || Sbjct 6974297 AAGG-TGCGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGAGG 6974355 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||| ||||| ||||| || ||||| ||| ||| | || ||||| || | || | Sbjct 6974356 AATGCCTTCCTTGTCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCAA 6974414 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| ||||| || || ||||| || ||||||||||| Sbjct 6974415 CCTCGAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6974463 Score = 98.7 bits (108), Expect = 7e-16 Identities = 169/242 (70%), Gaps = 5/242 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | ||| ||||||||||| || ||||| || |||||||||||| Sbjct 772670 CCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCC 772729 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| ||||| || ||| |||| || | ||| || || ||| Sbjct 772730 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGA 772789 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| ||||| ||| ||||| ||| ||| | || ||||| || | || || Sbjct 772790 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 772848 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 || | || || || || || || || ||||| || || |||||||| | |||||| Sbjct 772849 CTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCATCT---GAAATAA 772905 Query 15376 AA 15377 || Sbjct 772906 AA 772907 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || ||||||||||| || |||||||| ||||||||||| Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | || |||| || || || || | || | | || ||||| ||| Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| ||||| || || || ||| || ||| | || ||||| || | || || Sbjct 6973901 ATTCCCTCTTTATCTTGGATCTTAGCT-TTGACATTGTCAATGGTGTCTGAGCTCTCAAC 6973959 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| || |||||||| |||||||| || ||||| ||||||||| Sbjct 6973960 CTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCATA 6974008 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || ||||| || ||||| || ||| | || | ||||| | || Sbjct 6974033 TGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCATCTTCAAGCTGC 6974092 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || |||||| | || | | ||| ||||| || |||||||| ||||| || ||| Sbjct 6974093 TTACCAGCGAAAATAAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTT 6974152 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| || | || || || || |||| || || |||||||||||||| || || Sbjct 6974153 GC-CTTGACGTTGTCAATAGTGTCAGAGCTTTCAACCTCCAAGGTAATGGTTTTGCCAGT 6974211 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || ||||| || |||||| Sbjct 6974212 CAGAGTCTTGACAAAGATCTGCATA 6974236 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || ||||||||||| || || ||||| |||||||| || Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| ||||||| | || || || || | || | | || || || || Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| ||||| || |||||| || || | || || || || | || || Sbjct 772562 ATTCCTTCCTTGTCCTGGATCTTTGCT-TTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 772620 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| || || |||||||| || ||||| ||||||||| Sbjct 772621 CTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATA 772669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| || | ||| || || || || || ||||| || ||||||||||| Sbjct 14953290 CCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCA 14953349 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | || || | ||||| ||||| | || | | ||||| || || Sbjct 14953350 AGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 14953409 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 | |||||| ||||| || || ||| || ||| | || || || || | | || || Sbjct 14953410 ACTCCTTCCTTGTCTTGGATCTTAGCT-TTAACATTGTCAATAGTGTCTGAACTCTCAAC 14953468 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||||||||||||| || || || || ||||| || |||||| Sbjct 14953469 TTCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCATA 14953517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179169101587