Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 6e-23
seq5 102 6e-17
>seq1
Length=30427671
Score = 122 bits (134), Expect = 6e-23
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| ||||||| | || ||| |||||||| || || ||||| || ||||||||||| |
Sbjct 8315166 CCTCCTCTCAGACGTAGAACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAATCAGCT 8315107
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| |||| | ||||| |||||||| || ||| | ||||| ||||| || || |||
Sbjct 8315106 AGTGTTCTTCCATCTTCCAATTGTTTTCCGGCGAAGATCAACCGTTGCTGATCCGGTGGG 8315047
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||||| ||||| || || ||| || ||| | || || || || ||||||
Sbjct 8315046 ATTCCTTCCTTGTCTTGGATCTTCGCT-TTCACATTGTCGATTGTGTCTGATGATTCTAC 8314988
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|||||||| || || || || || || ||||| || || || ||||| ||
Sbjct 8314987 CTCTAAGGTTATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTTT 8314937
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| | | | || ||||| |||||||| || ||||| |||||||||||
Sbjct 24277049 CCACCTCTGAGACGAAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCG 24277108
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | ||||||| | || || || || | || | | || || || ||
Sbjct 24277109 AGTGTGCGACCGTCTTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGAGGG 24277168
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|||||||| || || || || ||| ||| | || || ||||| | |||| ||
Sbjct 24277169 ATTCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATAGTATCAGAACTTTCAACC 24277228
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || |||||||| ||||||| ||| || |||||||| ||||||
Sbjct 24277229 TCCAAAGTGATGGTTTTGCCTGTCAAAGTCTTGACAAAAATCTGCATA 24277276
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||| || || ||||| || ||||||||||| | | | || | || || | |||
Sbjct 24276620 TGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAAGTCCTTCCATCCTCGAGCTGT 24276679
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279
|| ||||| | || | | |||||||| ||| || | ||| || || ||| ||
Sbjct 24276680 TTACCAGCAAAGATGAGTCTCTGTTGGTCTGGTGGGATCCATTCCTTATCCTGAATCTTA 24276739
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || ||| | || || || || | || || || ||||||||||| || |||||
Sbjct 24276740 GCT-TTGACATTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAATGGTCTTGCCTGT 24276798
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
|| |||||| ||||| |||||||||
Sbjct 24276799 CAAAGTTTTCACAAAGATTTGCATA 24276823
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||| || || ||||| || ||||||||||| || | | | | ||||| ||
Sbjct 20550191 TGAAGAGTTGACTCTTTCTGGATGTTGTAATCCGCTAAAGTGCGACCATCTTCATGCTGC 20550132
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279
||||| || | || | | |||||||| || ||| ||||||||||| ||| |||
Sbjct 20550131 TTGCCTGCAAAGATGAGTCTCTGTTGGTCTGGTGAAATCCCTTCTTTGTCCTGAATCTTT 20550072
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
|| ||| ||| | || || ||||| |||| || || | || ||||| || || ||
Sbjct 20550071 GC-CTTCACATTGTCAATCGTATCAGAGCTTTCCACTTCAAGCGTGATGGTCTTTCCCGT 20550013
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
|| ||| ||||| ||||| |||||
Sbjct 20550012 CAAAGTCTTTACGAAAATCTGCAT 20549989
>seq5
Length=26975502
Score = 102 bits (112), Expect = 6e-17
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195
|||||||| || || | ||| || || || || || ||||| || ||||||||||| ||
Sbjct 6974237 CCACCTCTTAACCTGAGAACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAATCAGCC 6974296
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
|| | | | ||||||| || || |||||| | ||||| | ||| ||||| ||
Sbjct 6974297 AAGG-TGCGGCCATCTTCTAGCTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGAGG 6974355
Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
||| ||||| ||||| || ||||| ||| ||| | || ||||| || | || |
Sbjct 6974356 AATGCCTTCCTTGTCCTGGATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCAA 6974414
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | || ||||| ||||| || || ||||| || |||||||||||
Sbjct 6974415 CCTCGAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6974463
Score = 98.7 bits (108), Expect = 7e-16
Identities = 169/242 (70%), Gaps = 5/242 (2%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| || | | ||| ||||||||||| || ||||| || ||||||||||||
Sbjct 772670 CCACCTCTTAAACGGAGAACCAAATGAAGGGTTGATTCTTTCTGAATGTTGTAATCGGCC 772729
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | ||||||| ||||| || ||| |||| || | ||| || || |||
Sbjct 772730 AAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGA 772789
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| ||||| ||||| ||| ||||| ||| ||| | || ||||| || | || ||
Sbjct 772790 ATGCCTTCCTTGTCCTGAATCTTTGC-CTTAACATTGTCGATGGTGTCAGAGCTCTCAAC 772848
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375
|| | || || || || || || || ||||| || || |||||||| | ||||||
Sbjct 772849 CTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCATCT---GAAATAA 772905
Query 15376 AA 15377
||
Sbjct 772906 AA 772907
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||||| | | || ||||||||||| || |||||||| |||||||||||
Sbjct 6973781 CCACCTCTCAGACGAAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 6973840
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | || |||| || || || || | || | | || ||||| |||
Sbjct 6973841 AGAGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGTGGG 6973900
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||||| ||||| || || || ||| || ||| | || ||||| || | || ||
Sbjct 6973901 ATTCCCTCTTTATCTTGGATCTTAGCT-TTGACATTGTCAATGGTGTCTGAGCTCTCAAC 6973959
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | ||| || |||||||| |||||||| || ||||| |||||||||
Sbjct 6973960 CTCAAGGGTGATTGTTTTACCCGTCAGAGTCTTCACAAAGATTTGCATA 6974008
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||| || || || ||||| || ||||| || ||| | || | ||||| | ||
Sbjct 6974033 TGAAGAGTAGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCATCTTCAAGCTGC 6974092
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279
|| |||||| | || | | ||| ||||| || |||||||| ||||| || |||
Sbjct 6974093 TTACCAGCGAAAATAAGTCTTTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTGGATCTTT 6974152
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
|| ||| || | || || || || |||| || || |||||||||||||| || ||
Sbjct 6974153 GC-CTTGACGTTGTCAATAGTGTCAGAGCTTTCAACCTCCAAGGTAATGGTTTTGCCAGT 6974211
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
|||||| || ||||| || ||||||
Sbjct 6974212 CAGAGTCTTGACAAAGATCTGCATA 6974236
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| | | | || ||||||||||| || || ||||| |||||||| ||
Sbjct 772442 CCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA 772501
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| |||| ||||||| | || || || || | || | | || || || ||
Sbjct 772502 AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 772561
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||||| ||||| || |||||| || || | || || || || | || ||
Sbjct 772562 ATTCCTTCCTTGTCCTGGATCTTTGCT-TTGACGTTGTCAATAGTGTCAGAGCTCTCAAC 772620
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| || || |||||||| || ||||| |||||||||
Sbjct 772621 CTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATA 772669
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||| || | ||| || || || || || ||||| || |||||||||||
Sbjct 14953290 CCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCA 14953349
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | || || | ||||| ||||| | || | | ||||| || ||
Sbjct 14953350 AGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 14953409
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
| |||||| ||||| || || ||| || ||| | || || || || | | || ||
Sbjct 14953410 ACTCCTTCCTTGTCTTGGATCTTAGCT-TTAACATTGTCAATAGTGTCTGAACTCTCAAC 14953468
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| | ||||||||||||||| || || || || ||||| || ||||||
Sbjct 14953469 TTCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCATA 14953517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362179169101587
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