Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq5 89.7 4e-13
seq1 82.4 6e-11
>seq5
Length=26975502
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
|| |||| |||||| | |||| ||| | || || || || || || |||||||| ||
Sbjct 14953290 CCACCTCTCAACCTGAGAACCAAGTGGAGAGTTGATTCTTTCTGGATGTTGTAATCTGCA 14953349
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| || | || || ||||||||||| ||| | || |||||||| |||||| ||
Sbjct 14953350 AGAGTGCGACCATCGTCAAGCTGTTTACCAGCAAAGATTAGTCTCTGTTGATCCGGAGGG 14953409
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
|| || || ||||| || || ||| || | | | | ||| || | ||| |
Sbjct 14953410 ACTCCTTCCTTGTCTTGGATCTTAGCTTTAACATTGTCAATAGTGTCTGAACTCTCAACT 14953469
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||||||||||||||| || | || |||||||| || |||||
Sbjct 14953470 TCAAGGGTAATGGTTTTACCGGTAAGCGTCTTGACAAATATCTGCAT 14953516
>seq1
Length=30427671
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||| | ||| | || ||||||||||| || |||||||| || | || | |||||
Sbjct 20549514 CACAAGGTGAAGTGTTGACTCCTTTTGGATGTTGTAATCTGCAAGAGTGCGACCATCCTC 20549455
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||||||||||| | || |||||||| |||||| || | || || |||||
Sbjct 20549454 AAGCTGTTTACCCGCGAATATTAGTCTCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTG 20549395
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
|| || ||| || | | | | ||| || | ||| ||| | |||||||||||
Sbjct 20549394 GATCTTAGCTTTAACATTGTCAATAGTGTCTGTACTCTCAACTTCTAGGGTAATGGTTTA 20549335
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||| || | || ||||| || || |||||
Sbjct 20549334 ACCGGTAAGGGTCTTGACGAATATCTGCAT 20549305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414572764631758
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |