Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 3e-13 seq4 84.2 1e-11 >seq3 Length=23459830 Score = 89.7 bits (98), Expect = 3e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| |||| || ||||| || | || |||||||| || || |||||||||| Sbjct 3005773 ACCACCTCTCAACCTCAGAACCAAGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGC 3005832 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || || || | || || ||| ||| || | ||||||||||| || Sbjct 3005833 CAAGGTAAGGCCATCCTCGAGCTGTTTACCAGCAAAGATAAGTCGTTGCTGGTCTAAAGG 3005892 Query 33262 TATGCCTT-CTTTTTC--GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||| ||| ||| | | | ||| || || | ||||| | |||| || || Sbjct 3005893 AATGCCTTCCTTGTTCTGGATCTTAGCC---TTGACATTATGAATGGAGTCGGAGGTTTC 3005949 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || ||||| || ||| | |||||||| ||| || | ||||| || Sbjct 3005950 AACATCAAGTGTTATGGTCTTTTCTGTAAGAGTCTTTGCGTAGATTTGAAT 3006000 >seq4 Length=18585056 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | |||||||| || || || |||||||| | |||| | | Sbjct 2719685 CGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTACGACCA 2719626 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| ||||| ||| || || | |||||||||| || || ||||| || Sbjct 2719625 TCCTCCAATTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTA 2719566 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| ||||| | | || |||| ||| Sbjct 2719565 TCCTGGATCTTGGCC---TTCACGTTGTCAATGGTGTCAGAGCTCTCTACCTCCAAAGTG 2719509 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || ||||| || ||||| || ||||| Sbjct 2719508 ATAGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777572804286