Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq3 89.7 3e-13
seq4 84.2 1e-11
>seq3
Length=23459830
Score = 89.7 bits (98), Expect = 3e-13
Identities = 160/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| ||||| |||| || ||||| || | || |||||||| || || ||||||||||
Sbjct 3005773 ACCACCTCTCAACCTCAGAACCAAGTGGAGAGTTGACTCTTTCTGGATGTTGTAATCAGC 3005832
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
||| | || || || | || || ||| ||| || | ||||||||||| ||
Sbjct 3005833 CAAGGTAAGGCCATCCTCGAGCTGTTTACCAGCAAAGATAAGTCGTTGCTGGTCTAAAGG 3005892
Query 33262 TATGCCTT-CTTTTTC--GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
||||||| ||| ||| | | | ||| || || | ||||| | |||| || ||
Sbjct 3005893 AATGCCTTCCTTGTTCTGGATCTTAGCC---TTGACATTATGAATGGAGTCGGAGGTTTC 3005949
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| || || ||||| || ||| | |||||||| ||| || | ||||| ||
Sbjct 3005950 AACATCAAGTGTTATGGTCTTTTCTGTAAGAGTCTTTGCGTAGATTTGAAT 3006000
>seq4
Length=18585056
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
||||||||||| || | |||||||| || || || |||||||| | |||| | |
Sbjct 2719685 CGCAACACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAAAGTACGACCA 2719626
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274
|| |||||||| ||||| ||| || || | |||||||||| || || ||||| ||
Sbjct 2719625 TCCTCCAATTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTA 2719566
Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || | | ||| ||||| | | || |||| |||
Sbjct 2719565 TCCTGGATCTTGGCC---TTCACGTTGTCAATGGTGTCAGAGCTCTCTACCTCCAAAGTG 2719509
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || ||||| || ||||| || |||||
Sbjct 2719508 ATAGTCTTTCCGGTGAGAGTCTTCACGAAGATCTGCAT 2719471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318777572804286
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |